Gene annotation
Transcriptome id Sobic.004G336100.1
Synonym ATRNR1, CLS8, Sb04g036410, RNR1, R1
Functional annotation ribonucleoside-diphosphate reductase large subunit, putative, expressed
UniProt C5XV46
Pfam PF03477 PF00317 PF02867
Panther DB PTHR11573 PTHR11573:SF16
NCBI CDD -
KEGG Orthology K10807; ribonucleoside-diphosphate reductase subunit M1
Gene Ontology GO:0006260; DNA replication GO:0005524ATP binding GO:0004748ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor


Orthologs (automatic annotation)
TAIR AT2G21790 : ribonucleotide reductase 1
RAP-DB (Rice) LOC_Os02g56100.1 : ribonucleoside-diphosphate reductase large subunit, putative, expressed
MaizeGDB (Corn) Zm00025a049893 , Zm00025a041661
Brachypodium KQK19416 , KQK01220
Barley HORVU6Hr1G087960.2 , HORVU6Hr1G087960.3 , HORVU6Hr1G087960.1 , HORVU6Hr1G087960.6 , HORVU6Hr1G087960.7 , HORVU6Hr1G087960.4 , HORVU6Hr1G087960.5 , HORVU6Hr1G087960.8 , HORVU6Hr1G087960.9 , HORVU6Hr1G087960.21 , HORVU6Hr1G087960.10 , HORVU6Hr1G087960.11 , HORVU6Hr1G087960.12 , HORVU6Hr1G087960.13 , HORVU6Hr1G087960.14 , HORVU6Hr1G087960.15 , HORVU6Hr1G087960.16 , HORVU6Hr1G087960.17 , HORVU6Hr1G087960.18 , HORVU6Hr1G087960.19 , HORVU6Hr1G087960.27 , HORVU6Hr1G087960.26 , HORVU6Hr1G087960.20 , HORVU6Hr1G087960.23 , HORVU7Hr1G027430.7 , HORVU6Hr1G087960.24 , HORVU7Hr1G027430.5 , HORVU7Hr1G027430.4 , HORVU7Hr1G027430.3 , HORVU7Hr1G027430.2 , HORVU7Hr1G027430.1 , HORVU6Hr1G087960.22 , HORVU6Hr1G087960.29 , HORVU7Hr1G027430.9 , HORVU7Hr1G027430.8 , HORVU7Hr1G027430.19 , HORVU7Hr1G027430.17 , HORVU7Hr1G027430.16 , HORVU7Hr1G027430.15 , HORVU7Hr1G027430.14 , HORVU7Hr1G027430.13 , HORVU7Hr1G027430.12 , HORVU7Hr1G027430.11 , HORVU7Hr1G027430.10 , HORVU7Hr1G027430.6 , HORVU6Hr1G087960.28 , HORVU6Hr1G087960.25
Wheat TraesCS6D02G357100 , TraesCS7D02G130500 , TraesCS7D02G130500 , TraesCS7A02G131200 , TraesCS7A02G131200 , TraesCS7B02G031500 , TraesCS7B02G031500 , TraesCS6B02G410800 , TraesCS6B02G410800 , TraesCS6A02G373000
Populus PNT27654 , PNT27655 , PNT27652 , PNT27653 , PNT35682 , PNT35683


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G179300 OsFBX64 - F-box domain containing protein, expressed -
2 Sobic.010G025000 meiotic asynaptic mutant 1, putative, expressed -
3 Sobic.003G223900 extra-large G-protein-related, putative, expressed -
4 Sobic.001G217300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
5 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
6 Sobic.005G125000 ATP binding protein, putative, expressed K17592: sacsin
7 Sobic.003G360300 exostosin family domain containing protein, expressed -
8 Sobic.003G356300 cadmium tolerance factor, putative, expressed -
9 Sobic.002G203500 protein binding protein, putative, expressed -
10 Sobic.003G188600 expressed protein -
11 Sobic.010G278700 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
12 Sobic.003G410700 exostosin family domain containing protein, expressed -
13 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
14 Sobic.001G242500 - -
15 Sobic.008G026300 - -
16 Sobic.003G095800 phosphatidylserine synthase, putative, expressed K08730: phosphatidylserine synthase 2
17 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
18 Sobic.004G049200 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed K02327: DNA polymerase delta subunit 1
19 Sobic.001G205900 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
20 Sobic.003G435400 OsDegp14 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic004G336100 Sobic004G336100 Sobic006G179300 Sobic006G179300 Sobic004G336100--Sobic006G179300 Sobic010G025000 Sobic010G025000 Sobic004G336100--Sobic010G025000 Sobic003G223900 Sobic003G223900 Sobic004G336100--Sobic003G223900 Sobic001G217300 Sobic001G217300 Sobic004G336100--Sobic001G217300 Sobic004G277400 Sobic004G277400 Sobic004G336100--Sobic004G277400 Sobic005G125000 Sobic005G125000 Sobic004G336100--Sobic005G125000 Sobic003G360300 Sobic003G360300 Sobic004G336100--Sobic003G360300 Sobic003G356300 Sobic003G356300 Sobic004G336100--Sobic003G356300 Sobic002G203500 Sobic002G203500 Sobic004G336100--Sobic002G203500 Sobic006G179300--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic006G179300--Sobic008G080500 Sobic008G015200 Sobic008G015200 Sobic006G179300--Sobic008G015200 Sobic003G027800 Sobic003G027800 Sobic006G179300--Sobic003G027800 Sobic007G125700 Sobic007G125700 Sobic006G179300--Sobic007G125700 Sobic008G045000 Sobic008G045000 Sobic006G179300--Sobic008G045000 Sobic004G342300 Sobic004G342300 Sobic006G179300--Sobic004G342300 Sobic001G385400 Sobic001G385400 Sobic006G179300--Sobic001G385400 Sobic002G219900 Sobic002G219900 Sobic006G179300--Sobic002G219900 Sobic003G370300 Sobic003G370300 Sobic010G025000--Sobic003G370300 Sobic010G025000--Sobic004G336100 Sobic003G188600 Sobic003G188600 Sobic010G025000--Sobic003G188600 Sobic005G166500 Sobic005G166500 Sobic010G025000--Sobic005G166500 Sobic002G317700 Sobic002G317700 Sobic010G025000--Sobic002G317700 Sobic009G156400 Sobic009G156400 Sobic010G025000--Sobic009G156400 Sobic010G030000 Sobic010G030000 Sobic010G025000--Sobic010G030000 Sobic008G070700 Sobic008G070700 Sobic010G025000--Sobic008G070700 Sobic007G096800 Sobic007G096800 Sobic010G025000--Sobic007G096800 Sobic004G262600 Sobic004G262600 Sobic003G223900--Sobic004G262600 Sobic004G234300 Sobic004G234300 Sobic003G223900--Sobic004G234300 Sobic002G270800 Sobic002G270800 Sobic003G223900--Sobic002G270800 Sobic003G410700 Sobic003G410700 Sobic003G223900--Sobic003G410700 Sobic001G139300 Sobic001G139300 Sobic003G223900--Sobic001G139300 Sobic003G223900--Sobic004G336100 Sobic003G223900--Sobic001G217300 Sobic003G017200 Sobic003G017200 Sobic003G223900--Sobic003G017200 Sobic002G257900 Sobic002G257900 Sobic003G223900--Sobic002G257900 Sobic001G163300 Sobic001G163300 Sobic001G217300--Sobic001G163300 Sobic005G202000 Sobic005G202000 Sobic001G217300--Sobic005G202000 Sobic003G031500 Sobic003G031500 Sobic001G217300--Sobic003G031500 Sobic001G152600 Sobic001G152600 Sobic001G217300--Sobic001G152600 Sobic001G316900 Sobic001G316900 Sobic001G217300--Sobic001G316900 Sobic001G217300--Sobic004G262600 Sobic001G217300--Sobic003G356300 Sobic001G217300--Sobic003G223900 Sobic006G203400 Sobic006G203400 Sobic001G217300--Sobic006G203400 Sobic004G151200 Sobic004G151200 Sobic004G277400--Sobic004G151200 Sobic006G265600 Sobic006G265600 Sobic004G277400--Sobic006G265600 Sobic005G114500 Sobic005G114500 Sobic004G277400--Sobic005G114500 Sobic001G191900 Sobic001G191900 Sobic004G277400--Sobic001G191900 Sobic004G277400--Sobic003G360300 Sobic007G051400 Sobic007G051400 Sobic004G277400--Sobic007G051400 Sobic003G222700 Sobic003G222700 Sobic004G277400--Sobic003G222700 Sobic003G005900 Sobic003G005900 Sobic004G277400--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic004G277400--Sobic001G151600 Sobic003G066700 Sobic003G066700 Sobic005G125000--Sobic003G066700 Sobic001G137600 Sobic001G137600 Sobic005G125000--Sobic001G137600 Sobic007G128100 Sobic007G128100 Sobic005G125000--Sobic007G128100 Sobic007G070200 Sobic007G070200 Sobic005G125000--Sobic007G070200 Sobic007G033700 Sobic007G033700 Sobic005G125000--Sobic007G033700 Sobic005G125000--Sobic003G027800 Sobic007G161600 Sobic007G161600 Sobic005G125000--Sobic007G161600 Sobic004G220200 Sobic004G220200 Sobic005G125000--Sobic004G220200 Sobic010G276600 Sobic010G276600 Sobic005G125000--Sobic010G276600 Sobic003G259600 Sobic003G259600 Sobic003G360300--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G360300--Sobic001G123600 Sobic010G269300 Sobic010G269300 Sobic003G360300--Sobic010G269300 Sobic007G047600 Sobic007G047600 Sobic003G360300--Sobic007G047600 Sobic003G360300--Sobic006G179300 Sobic002G142700 Sobic002G142700 Sobic003G360300--Sobic002G142700 Sobic003G360300--Sobic004G342300 Sobic003G360300--Sobic004G277400 Sobic003G360300--Sobic008G080500 Sobic006G215000 Sobic006G215000 Sobic003G356300--Sobic006G215000 Sobic003G356300--Sobic001G217300 Sobic003G356300--Sobic002G203500 Sobic005G166100 Sobic005G166100 Sobic003G356300--Sobic005G166100 Sobic003G356300--Sobic001G152600 Sobic003G092500 Sobic003G092500 Sobic003G356300--Sobic003G092500 Sobic005G022300 Sobic005G022300 Sobic003G356300--Sobic005G022300 Sobic001G340900 Sobic001G340900 Sobic003G356300--Sobic001G340900 Sobic001G043500 Sobic001G043500 Sobic003G356300--Sobic001G043500 Sobic007G159200 Sobic007G159200 Sobic002G203500--Sobic007G159200 Sobic009G141700 Sobic009G141700 Sobic002G203500--Sobic009G141700 Sobic002G203500--Sobic007G128100 Sobic004G352100 Sobic004G352100 Sobic002G203500--Sobic004G352100 Sobic002G203500--Sobic007G125700 Sobic002G203500--Sobic001G043500 Sobic007G023100 Sobic007G023100 Sobic002G203500--Sobic007G023100 Sobic002G203500--Sobic007G161600 Sobic002G425200 Sobic002G425200 Sobic002G203500--Sobic002G425200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.