Gene annotation
Transcriptome id Sobic.003G188600.1
Synonym Sb03g025333
Functional annotation expressed protein
UniProt A0A1W0VY16
Pfam -
Panther DB PTHR33697
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G21295 : Tudor/PWWP/MBT superfamily protein
RAP-DB (Rice) LOC_Os01g37790.1 : expressed protein
MaizeGDB (Corn) Zm00025a028775
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G188600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G242500 - -
2 Sobic.002G112000 protein binding protein, putative, expressed -
3 Sobic.003G370300 GPI transamidase subunit PIG-U domain containing protein, expressed K10879: DNA-repair protein XRCC2
4 Sobic.002G317700 BNR/Asp-box repeat family protein, putative, expressed -
5 Sobic.003G259300 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
6 Sobic.007G121650 - -
7 Sobic.008G063600 glycosyl hydrolase family protein 27, putative, expressed -
8 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
9 Sobic.004G078500 Leucine Rich Repeat family protein, expressed -
10 Sobic.001G506300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
11 Sobic.003G129500 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
12 Sobic.003G204200 AP2/B3 transcription factor(PubMedID : 27016024)@B3 DNA binding domain containing protein, expressed -
13 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
14 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
15 Sobic.001G118800 homologous-pairing protein meu13, putative, expressed K06695: 26S proteasome regulatory subunit, ATPase 3, interacting protein
16 Sobic.003G390700 glycosyltransferase, putative, expressed -
17 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
18 Sobic.008G118100 kelch repeat protein, putative, expressed -
19 Sobic.007G184100 expressed protein -
20 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase


Gene co-expression network
sample Sobic003G188600 Sobic003G188600 Sobic001G242500 Sobic001G242500 Sobic003G188600--Sobic001G242500 Sobic002G112000 Sobic002G112000 Sobic003G188600--Sobic002G112000 Sobic003G370300 Sobic003G370300 Sobic003G188600--Sobic003G370300 Sobic002G317700 Sobic002G317700 Sobic003G188600--Sobic002G317700 Sobic003G259300 Sobic003G259300 Sobic003G188600--Sobic003G259300 Sobic007G121650 Sobic007G121650 Sobic003G188600--Sobic007G121650 Sobic008G063600 Sobic008G063600 Sobic003G188600--Sobic008G063600 Sobic002G335500 Sobic002G335500 Sobic003G188600--Sobic002G335500 Sobic004G078500 Sobic004G078500 Sobic003G188600--Sobic004G078500 Sobic008G118100 Sobic008G118100 Sobic001G242500--Sobic008G118100 Sobic001G242500--Sobic003G188600 Sobic008G090400 Sobic008G090400 Sobic001G242500--Sobic008G090400 Sobic010G087100 Sobic010G087100 Sobic001G242500--Sobic010G087100 Sobic006G281900 Sobic006G281900 Sobic001G242500--Sobic006G281900 Sobic001G242500--Sobic002G317700 Sobic004G190500 Sobic004G190500 Sobic001G242500--Sobic004G190500 Sobic007G187700 Sobic007G187700 Sobic001G242500--Sobic007G187700 Sobic001G377700 Sobic001G377700 Sobic001G242500--Sobic001G377700 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G112000--Sobic002G317700 Sobic008G070700 Sobic008G070700 Sobic002G112000--Sobic008G070700 Sobic010G222800 Sobic010G222800 Sobic002G112000--Sobic010G222800 Sobic003G129500 Sobic003G129500 Sobic002G112000--Sobic003G129500 Sobic006G272800 Sobic006G272800 Sobic002G112000--Sobic006G272800 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200 Sobic002G021200 Sobic002G021200 Sobic003G370300--Sobic002G021200 Sobic003G370300--Sobic002G112000 Sobic010G250400 Sobic010G250400 Sobic003G370300--Sobic010G250400 Sobic003G370300--Sobic003G129500 Sobic005G153000 Sobic005G153000 Sobic003G370300--Sobic005G153000 Sobic007G121600 Sobic007G121600 Sobic003G370300--Sobic007G121600 Sobic003G370300--Sobic002G317700 Sobic003G370300--Sobic001G377700 Sobic001G054700 Sobic001G054700 Sobic003G370300--Sobic001G054700 Sobic002G317700--Sobic002G112000 Sobic010G092400 Sobic010G092400 Sobic002G317700--Sobic010G092400 Sobic002G317700--Sobic008G070700 Sobic004G267600 Sobic004G267600 Sobic002G317700--Sobic004G267600 Sobic006G274200 Sobic006G274200 Sobic002G317700--Sobic006G274200 Sobic009G202801 Sobic009G202801 Sobic002G317700--Sobic009G202801 Sobic006G211900 Sobic006G211900 Sobic002G317700--Sobic006G211900 Sobic004G234500 Sobic004G234500 Sobic002G317700--Sobic004G234500 Sobic007G188001 Sobic007G188001 Sobic002G317700--Sobic007G188001 Sobic001G425700 Sobic001G425700 Sobic003G259300--Sobic001G425700 Sobic009G225500 Sobic009G225500 Sobic003G259300--Sobic009G225500 Sobic002G006100 Sobic002G006100 Sobic003G259300--Sobic002G006100 Sobic009G127800 Sobic009G127800 Sobic003G259300--Sobic009G127800 Sobic003G259300--Sobic006G272800 Sobic003G259300--Sobic005G153000 Sobic003G259300--Sobic001G054700 Sobic003G259300--Sobic004G234500 Sobic003G226700 Sobic003G226700 Sobic003G259300--Sobic003G226700 Sobic007G121650--Sobic007G121600 Sobic004G238801 Sobic004G238801 Sobic007G121650--Sobic004G238801 Sobic007G007800 Sobic007G007800 Sobic007G121650--Sobic007G007800 Sobic003G129200 Sobic003G129200 Sobic007G121650--Sobic003G129200 Sobic003G374100 Sobic003G374100 Sobic007G121650--Sobic003G374100 Sobic001G118800 Sobic001G118800 Sobic007G121650--Sobic001G118800 Sobic010G204700 Sobic010G204700 Sobic007G121650--Sobic010G204700 Sobic005G020100 Sobic005G020100 Sobic007G121650--Sobic005G020100 Sobic007G121650--Sobic010G092400 Sobic001G027500 Sobic001G027500 Sobic008G063600--Sobic001G027500 Sobic002G168000 Sobic002G168000 Sobic008G063600--Sobic002G168000 Sobic009G012600 Sobic009G012600 Sobic008G063600--Sobic009G012600 Sobic003G396700 Sobic003G396700 Sobic008G063600--Sobic003G396700 Sobic009G045300 Sobic009G045300 Sobic008G063600--Sobic009G045300 Sobic008G063600--Sobic003G188600 Sobic008G063600--Sobic003G129500 Sobic008G045000 Sobic008G045000 Sobic008G063600--Sobic008G045000 Sobic009G188900 Sobic009G188900 Sobic008G063600--Sobic009G188900 Sobic002G335500--Sobic004G078500 Sobic001G081800 Sobic001G081800 Sobic002G335500--Sobic001G081800 Sobic002G196500 Sobic002G196500 Sobic002G335500--Sobic002G196500 Sobic001G005800 Sobic001G005800 Sobic002G335500--Sobic001G005800 Sobic002G335500--Sobic009G002200 Sobic002G335500--Sobic003G259300 Sobic002G335500--Sobic002G006100 Sobic004G145300 Sobic004G145300 Sobic002G335500--Sobic004G145300 Sobic001G465500 Sobic001G465500 Sobic002G335500--Sobic001G465500 Sobic004G078500--Sobic002G335500 Sobic004G078500--Sobic002G006100 Sobic004G078500--Sobic009G002200 Sobic004G078500--Sobic002G112000 Sobic005G018050 Sobic005G018050 Sobic004G078500--Sobic005G018050 Sobic004G078500--Sobic001G081800 Sobic004G078500--Sobic003G259300 Sobic003G290400 Sobic003G290400 Sobic004G078500--Sobic003G290400 Sobic004G078500--Sobic001G465500
Octagon: transcription factors


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