Gene annotation
Transcriptome id Sobic.003G370300.4,Sobic.003G370300.11,Sobic.003G370300.9,Sobic.003G370300.7,Sobic.003G370300.1,Sobic.003G370300.10,Sobic.003G370300.6,Sobic.003G370300.5,Sobic.003G370300.8
Synonym ATXRCC2, XRCC2, Sb03g041130
Functional annotation GPI transamidase subunit PIG-U domain containing protein, expressed
UniProt A0A1W0W0P8 , A0A1W0W0R8 , A0A1W0W0P7 , A0A1W0W0Q0 , A0A1W0W0R0
Pfam -
Panther DB PTHR22942 PTHR22942:SF36 PTHR22942:SF36 PTHR22942
NCBI CDD KOG2859; DNA repair protein, member of the recA/RAD51 family
KEGG Orthology K10879; DNA-repair protein XRCC2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64520 : homolog of X-ray repair cross complementing 2 (XRCC2)
RAP-DB (Rice) LOC_Os01g64990.1,LOC_Os01g64990.2 : GPI transamidase subunit PIG-U domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026659
Brachypodium -
Barley -
Wheat TraesCS3A02G381500 , TraesCS3A02G381500 , TraesCS3A02G381500 , TraesCS3A02G381500 , TraesCS3B02G414200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
2 Sobic.002G112000 protein binding protein, putative, expressed -
3 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
4 Sobic.003G129500 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
5 Sobic.005G153000 agenet domain containing protein, expressed -
6 Sobic.007G121600 - -
7 Sobic.002G317700 BNR/Asp-box repeat family protein, putative, expressed -
8 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
9 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
10 Sobic.002G168000 expressed protein -
11 Sobic.010G222800 expressed protein -
12 Sobic.003G188600 expressed protein -
13 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
14 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
15 Sobic.009G057800 kelch repeat-containing protein, putative, expressed -
16 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
17 Sobic.003G055600 expressed protein -
18 Sobic.008G070700 leafbladeless1, putative, expressed -
19 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
20 Sobic.002G190000 ZOS9-05 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic003G370300 Sobic003G370300 Sobic002G021200 Sobic002G021200 Sobic003G370300--Sobic002G021200 Sobic002G112000 Sobic002G112000 Sobic003G370300--Sobic002G112000 Sobic010G250400 Sobic010G250400 Sobic003G370300--Sobic010G250400 Sobic003G129500 Sobic003G129500 Sobic003G370300--Sobic003G129500 Sobic005G153000 Sobic005G153000 Sobic003G370300--Sobic005G153000 Sobic007G121600 Sobic007G121600 Sobic003G370300--Sobic007G121600 Sobic002G317700 Sobic002G317700 Sobic003G370300--Sobic002G317700 Sobic001G377700 Sobic001G377700 Sobic003G370300--Sobic001G377700 Sobic001G054700 Sobic001G054700 Sobic003G370300--Sobic001G054700 Sobic007G187700 Sobic007G187700 Sobic002G021200--Sobic007G187700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic002G021200--Sobic006G281900 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G112000--Sobic002G317700 Sobic008G070700 Sobic008G070700 Sobic002G112000--Sobic008G070700 Sobic010G222800 Sobic010G222800 Sobic002G112000--Sobic010G222800 Sobic002G112000--Sobic003G129500 Sobic006G272800 Sobic006G272800 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200 Sobic009G188900 Sobic009G188900 Sobic010G250400--Sobic009G188900 Sobic010G250400--Sobic005G153000 Sobic010G250400--Sobic002G021200 Sobic003G147500 Sobic003G147500 Sobic010G250400--Sobic003G147500 Sobic010G250400--Sobic002G168000 Sobic009G207400 Sobic009G207400 Sobic010G250400--Sobic009G207400 Sobic010G250400--Sobic007G187700 Sobic010G250400--Sobic001G054700 Sobic001G532800 Sobic001G532800 Sobic010G250400--Sobic001G532800 Sobic003G129500--Sobic005G153000 Sobic003G129500--Sobic002G112000 Sobic003G129500--Sobic002G168000 Sobic009G012400 Sobic009G012400 Sobic003G129500--Sobic009G012400 Sobic003G129500--Sobic010G250400 Sobic003G423800 Sobic003G423800 Sobic003G129500--Sobic003G423800 Sobic003G129500--Sobic003G370300 Sobic003G129500--Sobic010G222800 Sobic003G183466 Sobic003G183466 Sobic003G129500--Sobic003G183466 Sobic005G153000--Sobic009G077300 Sobic005G153000--Sobic002G168000 Sobic004G282601 Sobic004G282601 Sobic005G153000--Sobic004G282601 Sobic010G037901 Sobic010G037901 Sobic005G153000--Sobic010G037901 Sobic003G290400 Sobic003G290400 Sobic005G153000--Sobic003G290400 Sobic005G153000--Sobic007G187700 Sobic006G221300 Sobic006G221300 Sobic005G153000--Sobic006G221300 Sobic005G153000--Sobic003G129500 Sobic005G196600 Sobic005G196600 Sobic005G153000--Sobic005G196600 Sobic007G121650 Sobic007G121650 Sobic007G121600--Sobic007G121650 Sobic005G062600 Sobic005G062600 Sobic007G121600--Sobic005G062600 Sobic010G092400 Sobic010G092400 Sobic007G121600--Sobic010G092400 Sobic009G184200 Sobic009G184200 Sobic007G121600--Sobic009G184200 Sobic002G050700 Sobic002G050700 Sobic007G121600--Sobic002G050700 Sobic007G121600--Sobic002G317700 Sobic003G393100 Sobic003G393100 Sobic007G121600--Sobic003G393100 Sobic007G121600--Sobic002G021200 Sobic004G317000 Sobic004G317000 Sobic007G121600--Sobic004G317000 Sobic002G317700--Sobic002G112000 Sobic002G317700--Sobic010G092400 Sobic002G317700--Sobic008G070700 Sobic004G267600 Sobic004G267600 Sobic002G317700--Sobic004G267600 Sobic006G274200 Sobic006G274200 Sobic002G317700--Sobic006G274200 Sobic009G202801 Sobic009G202801 Sobic002G317700--Sobic009G202801 Sobic006G211900 Sobic006G211900 Sobic002G317700--Sobic006G211900 Sobic004G234500 Sobic004G234500 Sobic002G317700--Sobic004G234500 Sobic007G188001 Sobic007G188001 Sobic002G317700--Sobic007G188001 Sobic002G290000 Sobic002G290000 Sobic001G377700--Sobic002G290000 Sobic001G377700--Sobic002G021200 Sobic003G183700 Sobic003G183700 Sobic001G377700--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic001G377700--Sobic005G110535 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic001G377700--Sobic005G157300 Sobic001G054700--Sobic006G221300 Sobic001G054700--Sobic009G077300 Sobic004G108400 Sobic004G108400 Sobic001G054700--Sobic004G108400 Sobic009G143200 Sobic009G143200 Sobic001G054700--Sobic009G143200 Sobic001G054700--Sobic002G050700 Sobic006G124400 Sobic006G124400 Sobic001G054700--Sobic006G124400 Sobic009G127800 Sobic009G127800 Sobic001G054700--Sobic009G127800 Sobic001G054700--Sobic005G153000 Sobic006G221800 Sobic006G221800 Sobic001G054700--Sobic006G221800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.