Gene annotation
Transcriptome id Sobic.002G112000.2,Sobic.002G112000.1
Synonym Sb02g009586
Functional annotation protein binding protein, putative, expressed
UniProt A0A1B6QAK1
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF130
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03000 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g04950.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a013307
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G057800 kelch repeat-containing protein, putative, expressed -
2 Sobic.007G201900 expressed protein -
3 Sobic.002G317700 BNR/Asp-box repeat family protein, putative, expressed -
4 Sobic.008G070700 leafbladeless1, putative, expressed -
5 Sobic.010G222800 expressed protein -
6 Sobic.003G129500 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
7 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
8 Sobic.004G190500 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter BoSUT1, putative, expressed K15378: solute carrier family 45, member 1/2/4
9 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
10 Sobic.005G153000 agenet domain containing protein, expressed -
11 Sobic.004G078500 Leucine Rich Repeat family protein, expressed -
12 Sobic.004G220200 expressed protein -
13 Sobic.007G121600 - -
14 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
15 Sobic.003G370300 GPI transamidase subunit PIG-U domain containing protein, expressed K10879: DNA-repair protein XRCC2
16 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
17 Sobic.003G423800 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
18 Sobic.009G012400 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
19 Sobic.003G072500 transcription factor X1, putative, expressed -
20 Sobic.003G290400 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -


Gene co-expression network
sample Sobic002G112000 Sobic002G112000 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G317700 Sobic002G317700 Sobic002G112000--Sobic002G317700 Sobic008G070700 Sobic008G070700 Sobic002G112000--Sobic008G070700 Sobic010G222800 Sobic010G222800 Sobic002G112000--Sobic010G222800 Sobic003G129500 Sobic003G129500 Sobic002G112000--Sobic003G129500 Sobic006G272800 Sobic006G272800 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200 Sobic009G057800--Sobic007G201900 Sobic009G057800--Sobic002G112000 Sobic001G101700 Sobic001G101700 Sobic009G057800--Sobic001G101700 Sobic002G279400 Sobic002G279400 Sobic009G057800--Sobic002G279400 Sobic008G151600 Sobic008G151600 Sobic009G057800--Sobic008G151600 Sobic007G209200 Sobic007G209200 Sobic009G057800--Sobic007G209200 Sobic010G255000 Sobic010G255000 Sobic009G057800--Sobic010G255000 Sobic009G143200 Sobic009G143200 Sobic009G057800--Sobic009G143200 Sobic003G282500 Sobic003G282500 Sobic009G057800--Sobic003G282500 Sobic007G201900--Sobic009G057800 Sobic007G201900--Sobic001G101700 Sobic007G201900--Sobic010G255000 Sobic007G201900--Sobic002G112000 Sobic007G201900--Sobic002G279400 Sobic001G101900 Sobic001G101900 Sobic007G201900--Sobic001G101900 Sobic003G244000 Sobic003G244000 Sobic007G201900--Sobic003G244000 Sobic007G201900--Sobic009G143200 Sobic007G147200 Sobic007G147200 Sobic007G201900--Sobic007G147200 Sobic002G317700--Sobic002G112000 Sobic010G092400 Sobic010G092400 Sobic002G317700--Sobic010G092400 Sobic002G317700--Sobic008G070700 Sobic004G267600 Sobic004G267600 Sobic002G317700--Sobic004G267600 Sobic006G274200 Sobic006G274200 Sobic002G317700--Sobic006G274200 Sobic009G202801 Sobic009G202801 Sobic002G317700--Sobic009G202801 Sobic006G211900 Sobic006G211900 Sobic002G317700--Sobic006G211900 Sobic004G234500 Sobic004G234500 Sobic002G317700--Sobic004G234500 Sobic007G188001 Sobic007G188001 Sobic002G317700--Sobic007G188001 Sobic008G070700--Sobic006G272800 Sobic008G070700--Sobic002G112000 Sobic008G070700--Sobic004G267600 Sobic001G439800 Sobic001G439800 Sobic008G070700--Sobic001G439800 Sobic008G070700--Sobic010G222800 Sobic008G070700--Sobic010G092400 Sobic008G070700--Sobic002G317700 Sobic001G175100 Sobic001G175100 Sobic008G070700--Sobic001G175100 Sobic003G393100 Sobic003G393100 Sobic008G070700--Sobic003G393100 Sobic003G343200 Sobic003G343200 Sobic010G222800--Sobic003G343200 Sobic010G024000 Sobic010G024000 Sobic010G222800--Sobic010G024000 Sobic003G411700 Sobic003G411700 Sobic010G222800--Sobic003G411700 Sobic010G222800--Sobic002G112000 Sobic010G222800--Sobic008G070700 Sobic002G271400 Sobic002G271400 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic008G131900 Sobic008G131900 Sobic010G222800--Sobic008G131900 Sobic005G153000 Sobic005G153000 Sobic003G129500--Sobic005G153000 Sobic003G129500--Sobic002G112000 Sobic002G168000 Sobic002G168000 Sobic003G129500--Sobic002G168000 Sobic009G012400 Sobic009G012400 Sobic003G129500--Sobic009G012400 Sobic010G250400 Sobic010G250400 Sobic003G129500--Sobic010G250400 Sobic003G129500--Sobic003G423800 Sobic003G370300 Sobic003G370300 Sobic003G129500--Sobic003G370300 Sobic003G129500--Sobic010G222800 Sobic003G183466 Sobic003G183466 Sobic003G129500--Sobic003G183466 Sobic002G284100 Sobic002G284100 Sobic006G272800--Sobic002G284100 Sobic002G027600 Sobic002G027600 Sobic006G272800--Sobic002G027600 Sobic006G272800--Sobic004G267600 Sobic006G272800--Sobic008G070700 Sobic005G032600 Sobic005G032600 Sobic006G272800--Sobic005G032600 Sobic001G468000 Sobic001G468000 Sobic006G272800--Sobic001G468000 Sobic002G006100 Sobic002G006100 Sobic006G272800--Sobic002G006100 Sobic006G142500 Sobic006G142500 Sobic006G272800--Sobic006G142500 Sobic001G158300 Sobic001G158300 Sobic006G272800--Sobic001G158300 Sobic004G190500--Sobic002G112000 Sobic002G190000 Sobic002G190000 Sobic004G190500--Sobic002G190000 Sobic004G321400 Sobic004G321400 Sobic004G190500--Sobic004G321400 Sobic004G190500--Sobic002G317700 Sobic003G204200 Sobic003G204200 Sobic004G190500--Sobic003G204200 Sobic004G317000 Sobic004G317000 Sobic004G190500--Sobic004G317000 Sobic001G118800 Sobic001G118800 Sobic004G190500--Sobic001G118800 Sobic007G121650 Sobic007G121650 Sobic004G190500--Sobic007G121650 Sobic004G190500--Sobic009G143200 Sobic007G050800 Sobic007G050800 Sobic009G002200--Sobic007G050800 Sobic003G290400 Sobic003G290400 Sobic009G002200--Sobic003G290400 Sobic004G282601 Sobic004G282601 Sobic009G002200--Sobic004G282601 Sobic006G135800 Sobic006G135800 Sobic009G002200--Sobic006G135800 Sobic005G036200 Sobic005G036200 Sobic009G002200--Sobic005G036200 Sobic009G002200--Sobic005G153000 Sobic001G375800 Sobic001G375800 Sobic009G002200--Sobic001G375800 Sobic004G078500 Sobic004G078500 Sobic009G002200--Sobic004G078500 Sobic010G037901 Sobic010G037901 Sobic009G002200--Sobic010G037901
Octagon: transcription factors


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