Gene annotation
Transcriptome id Sobic.002G196500.1
Synonym Sb02g024290, HMGA
Functional annotation linker histone H1 and H5 family protein, expressed
UniProt C5XC59
Pfam PF00538
Panther DB PTHR11467 PTHR11467:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G14900 : high mobility group A
RAP-DB (Rice) LOC_Os09g23730.1 : HMG-Y-related protein A, putative, expressed
MaizeGDB (Corn) Zm00025a046912
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G250100 homeobox domain containing protein, expressed -
2 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
3 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
4 Sobic.002G112000 protein binding protein, putative, expressed -
5 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
6 Sobic.004G234600 expressed protein -
7 Sobic.007G201900 expressed protein -
8 Sobic.001G171100 expressed protein -
9 Sobic.003G091200 seven in absentia protein family domain containing protein, expressed -
10 Sobic.004G220200 expressed protein -
11 Sobic.008G070700 leafbladeless1, putative, expressed -
12 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
13 Sobic.010G212700 tetraspanin family protein, putative, expressed -
14 Sobic.003G204200 AP2/B3 transcription factor(PubMedID : 27016024)@B3 DNA binding domain containing protein, expressed -
15 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
16 Sobic.004G149400 ankyrin, putative, expressed -
17 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
18 Sobic.004G035800 uncharacterized protein At4g06744 precursor, putative, expressed -
19 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
20 Sobic.001G171200 expressed protein -


Gene co-expression network
sample Sobic002G196500 Sobic002G196500 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic001G468000 Sobic001G468000 Sobic002G196500--Sobic001G468000 Sobic006G272800 Sobic006G272800 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic001G171100 Sobic001G171100 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200 Sobic003G250100--Sobic004G234600 Sobic004G281000 Sobic004G281000 Sobic003G250100--Sobic004G281000 Sobic010G183800 Sobic010G183800 Sobic003G250100--Sobic010G183800 Sobic003G250100--Sobic002G196500 Sobic001G456000 Sobic001G456000 Sobic003G250100--Sobic001G456000 Sobic010G255000 Sobic010G255000 Sobic003G250100--Sobic010G255000 Sobic002G078900 Sobic002G078900 Sobic003G250100--Sobic002G078900 Sobic001G071600 Sobic001G071600 Sobic003G250100--Sobic001G071600 Sobic001G457600 Sobic001G457600 Sobic003G250100--Sobic001G457600 Sobic006G066400 Sobic006G066400 Sobic001G468000--Sobic006G066400 Sobic010G212700 Sobic010G212700 Sobic001G468000--Sobic010G212700 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic002G284100 Sobic002G284100 Sobic001G468000--Sobic002G284100 Sobic001G158300 Sobic001G158300 Sobic001G468000--Sobic001G158300 Sobic010G180200 Sobic010G180200 Sobic001G468000--Sobic010G180200 Sobic002G302600 Sobic002G302600 Sobic001G468000--Sobic002G302600 Sobic001G468000--Sobic001G171100 Sobic006G272800--Sobic002G284100 Sobic002G027600 Sobic002G027600 Sobic006G272800--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic006G272800--Sobic004G267600 Sobic008G070700 Sobic008G070700 Sobic006G272800--Sobic008G070700 Sobic005G032600 Sobic005G032600 Sobic006G272800--Sobic005G032600 Sobic006G272800--Sobic001G468000 Sobic002G006100 Sobic002G006100 Sobic006G272800--Sobic002G006100 Sobic006G142500 Sobic006G142500 Sobic006G272800--Sobic006G142500 Sobic006G272800--Sobic001G158300 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic002G112000--Sobic007G201900 Sobic002G317700 Sobic002G317700 Sobic002G112000--Sobic002G317700 Sobic002G112000--Sobic008G070700 Sobic010G222800 Sobic010G222800 Sobic002G112000--Sobic010G222800 Sobic003G129500 Sobic003G129500 Sobic002G112000--Sobic003G129500 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200 Sobic004G078500 Sobic004G078500 Sobic002G335500--Sobic004G078500 Sobic001G081800 Sobic001G081800 Sobic002G335500--Sobic001G081800 Sobic002G335500--Sobic002G196500 Sobic001G005800 Sobic001G005800 Sobic002G335500--Sobic001G005800 Sobic002G335500--Sobic009G002200 Sobic003G259300 Sobic003G259300 Sobic002G335500--Sobic003G259300 Sobic002G335500--Sobic002G006100 Sobic004G145300 Sobic004G145300 Sobic002G335500--Sobic004G145300 Sobic001G465500 Sobic001G465500 Sobic002G335500--Sobic001G465500 Sobic007G128200 Sobic007G128200 Sobic004G234600--Sobic007G128200 Sobic001G216400 Sobic001G216400 Sobic004G234600--Sobic001G216400 Sobic009G063700 Sobic009G063700 Sobic004G234600--Sobic009G063700 Sobic002G053350 Sobic002G053350 Sobic004G234600--Sobic002G053350 Sobic004G234600--Sobic001G457600 Sobic001G419500 Sobic001G419500 Sobic004G234600--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic004G234600--Sobic010G194600 Sobic001G158100 Sobic001G158100 Sobic004G234600--Sobic001G158100 Sobic004G234600--Sobic010G183800 Sobic007G201900--Sobic009G057800 Sobic001G101700 Sobic001G101700 Sobic007G201900--Sobic001G101700 Sobic007G201900--Sobic010G255000 Sobic007G201900--Sobic002G112000 Sobic002G279400 Sobic002G279400 Sobic007G201900--Sobic002G279400 Sobic001G101900 Sobic001G101900 Sobic007G201900--Sobic001G101900 Sobic003G244000 Sobic003G244000 Sobic007G201900--Sobic003G244000 Sobic009G143200 Sobic009G143200 Sobic007G201900--Sobic009G143200 Sobic007G147200 Sobic007G147200 Sobic007G201900--Sobic007G147200 Sobic001G171100--Sobic010G212700 Sobic003G022900 Sobic003G022900 Sobic001G171100--Sobic003G022900 Sobic001G377600 Sobic001G377600 Sobic001G171100--Sobic001G377600 Sobic008G072900 Sobic008G072900 Sobic001G171100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic001G171100--Sobic003G027200 Sobic005G164800 Sobic005G164800 Sobic001G171100--Sobic005G164800 Sobic003G029900 Sobic003G029900 Sobic001G171100--Sobic003G029900 Sobic001G171200 Sobic001G171200 Sobic001G171100--Sobic001G171200 Sobic006G097300 Sobic006G097300 Sobic001G171100--Sobic006G097300 Sobic003G091200--Sobic002G196500 Sobic005G162900 Sobic005G162900 Sobic003G091200--Sobic005G162900 Sobic004G149400 Sobic004G149400 Sobic003G091200--Sobic004G149400 Sobic001G137400 Sobic001G137400 Sobic003G091200--Sobic001G137400 Sobic003G091200--Sobic001G171200 Sobic009G243000 Sobic009G243000 Sobic003G091200--Sobic009G243000 Sobic003G091200--Sobic003G022900 Sobic004G220200 Sobic004G220200 Sobic003G091200--Sobic004G220200 Sobic003G091200--Sobic001G457600
Octagon: transcription factors


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