Gene annotation
Transcriptome id Sobic.003G091200.5,Sobic.003G091200.1,Sobic.003G091200.2,Sobic.003G091200.6,Sobic.003G091200.4,Sobic.003G091200.3
Synonym Sb03g007630
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt A0A1W0VWB8 , C5XE40 , A0A1W0VWB6 , A0A1B6Q256
Pfam -
Panther DB PTHR10315:SF30 PTHR10315 PTHR10315 PTHR10315:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0006511ubiquitin-dependent protein catabolic process GO:0007275multicellular organism development GO:0007275multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37870 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g03290.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
2 Sobic.005G162900 dnaJ domain containing protein, expressed -
3 Sobic.004G149400 ankyrin, putative, expressed -
4 Sobic.001G137400 ankyrin, putative, expressed -
5 Sobic.001G171200 expressed protein -
6 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
7 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
8 Sobic.004G220200 expressed protein -
9 Sobic.001G457600 piwi domain containing protein, expressed -
10 Sobic.001G138900 expressed protein -
11 Sobic.001G137500 ankyrin, putative, expressed -
12 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
13 Sobic.004G234600 expressed protein -
14 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.007G127950 - -
16 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
18 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
19 Sobic.004G207000 fasciated ear2, putative, expressed -
20 Sobic.006G097300 F-box protein FBW2, putative, expressed -


Gene co-expression network
sample Sobic003G091200 Sobic003G091200 Sobic002G196500 Sobic002G196500 Sobic003G091200--Sobic002G196500 Sobic005G162900 Sobic005G162900 Sobic003G091200--Sobic005G162900 Sobic004G149400 Sobic004G149400 Sobic003G091200--Sobic004G149400 Sobic001G137400 Sobic001G137400 Sobic003G091200--Sobic001G137400 Sobic001G171200 Sobic001G171200 Sobic003G091200--Sobic001G171200 Sobic009G243000 Sobic009G243000 Sobic003G091200--Sobic009G243000 Sobic003G022900 Sobic003G022900 Sobic003G091200--Sobic003G022900 Sobic004G220200 Sobic004G220200 Sobic003G091200--Sobic004G220200 Sobic001G457600 Sobic001G457600 Sobic003G091200--Sobic001G457600 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic001G468000 Sobic001G468000 Sobic002G196500--Sobic001G468000 Sobic006G272800 Sobic006G272800 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic001G171100 Sobic001G171100 Sobic002G196500--Sobic001G171100 Sobic002G196500--Sobic003G091200 Sobic001G071600 Sobic001G071600 Sobic005G162900--Sobic001G071600 Sobic005G162900--Sobic003G091200 Sobic006G271600 Sobic006G271600 Sobic005G162900--Sobic006G271600 Sobic007G033700 Sobic007G033700 Sobic005G162900--Sobic007G033700 Sobic005G162900--Sobic009G243000 Sobic002G078900 Sobic002G078900 Sobic005G162900--Sobic002G078900 Sobic005G163500 Sobic005G163500 Sobic005G162900--Sobic005G163500 Sobic010G183800 Sobic010G183800 Sobic005G162900--Sobic010G183800 Sobic007G121700 Sobic007G121700 Sobic005G162900--Sobic007G121700 Sobic004G207000 Sobic004G207000 Sobic004G149400--Sobic004G207000 Sobic004G149400--Sobic004G220200 Sobic005G062600 Sobic005G062600 Sobic004G149400--Sobic005G062600 Sobic009G216500 Sobic009G216500 Sobic004G149400--Sobic009G216500 Sobic004G149400--Sobic003G091200 Sobic008G070700 Sobic008G070700 Sobic004G149400--Sobic008G070700 Sobic006G106200 Sobic006G106200 Sobic004G149400--Sobic006G106200 Sobic004G149400--Sobic002G196500 Sobic004G149400--Sobic001G171200 Sobic001G137500 Sobic001G137500 Sobic001G137400--Sobic001G137500 Sobic002G258000 Sobic002G258000 Sobic001G137400--Sobic002G258000 Sobic007G193300 Sobic007G193300 Sobic001G137400--Sobic007G193300 Sobic001G137400--Sobic001G457600 Sobic010G194600 Sobic010G194600 Sobic001G137400--Sobic010G194600 Sobic001G288000 Sobic001G288000 Sobic001G137400--Sobic001G288000 Sobic001G137400--Sobic009G243000 Sobic001G086400 Sobic001G086400 Sobic001G137400--Sobic001G086400 Sobic001G419500 Sobic001G419500 Sobic001G137400--Sobic001G419500 Sobic001G171200--Sobic004G220200 Sobic006G097300 Sobic006G097300 Sobic001G171200--Sobic006G097300 Sobic007G128200 Sobic007G128200 Sobic001G171200--Sobic007G128200 Sobic001G171200--Sobic004G234600 Sobic002G121900 Sobic002G121900 Sobic001G171200--Sobic002G121900 Sobic001G171200--Sobic007G193300 Sobic001G171200--Sobic010G194600 Sobic001G171200--Sobic001G086400 Sobic001G171200--Sobic001G457600 Sobic009G243000--Sobic007G033700 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic003G006000 Sobic003G006000 Sobic009G243000--Sobic003G006000 Sobic003G046400 Sobic003G046400 Sobic009G243000--Sobic003G046400 Sobic001G137600 Sobic001G137600 Sobic009G243000--Sobic001G137600 Sobic009G243000--Sobic002G258000 Sobic003G022900--Sobic001G171100 Sobic003G022900--Sobic006G097300 Sobic003G022900--Sobic001G171200 Sobic003G022900--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic003G022900--Sobic008G072900 Sobic010G212700 Sobic010G212700 Sobic003G022900--Sobic010G212700 Sobic006G066400 Sobic006G066400 Sobic003G022900--Sobic006G066400 Sobic003G022900--Sobic001G137400 Sobic004G218000 Sobic004G218000 Sobic003G022900--Sobic004G218000 Sobic004G220200--Sobic001G171200 Sobic004G220200--Sobic001G137400 Sobic004G220200--Sobic009G243000 Sobic004G220200--Sobic004G234600 Sobic004G220200--Sobic001G086400 Sobic004G220200--Sobic010G194600 Sobic006G163300 Sobic006G163300 Sobic004G220200--Sobic006G163300 Sobic002G053350 Sobic002G053350 Sobic004G220200--Sobic002G053350 Sobic004G220200--Sobic001G137600 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic001G457600--Sobic002G258000 Sobic001G457600--Sobic007G128200 Sobic001G457600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic001G457600--Sobic007G193300
Octagon: transcription factors


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