Gene annotation
Transcriptome id Sobic.003G022900.1
Synonym Sb03g002170
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6Q119
Pfam PF14570
Panther DB PTHR12603 PTHR12603:SF4
NCBI CDD KOG2068; MOT2 transcription factor
KEGG Orthology K10643; CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G45630 : RNA binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g11130.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022946
Brachypodium KQK03258
Barley HORVU3Hr1G029060.14 , HORVU3Hr1G029060.15 , HORVU3Hr1G029060.16 , HORVU3Hr1G029060.17 , HORVU3Hr1G029060.10 , HORVU3Hr1G029060.11 , HORVU3Hr1G029060.12 , HORVU3Hr1G029060.13 , HORVU3Hr1G029060.1 , HORVU3Hr1G029060.8 , HORVU3Hr1G029060.9 , HORVU3Hr1G029060.6 , HORVU3Hr1G029060.7 , HORVU3Hr1G029060.4 , HORVU3Hr1G029060.5 , HORVU3Hr1G029060.2 , HORVU3Hr1G029060.3
Wheat TraesCS3B02G165900 , TraesCS3A02G133600 , TraesCS3A02G133600 , TraesCS3D02G149900 , TraesCS3D02G149900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G171100 expressed protein -
2 Sobic.006G097300 F-box protein FBW2, putative, expressed -
3 Sobic.001G171200 expressed protein -
4 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.008G072900 OsMADS13 - MADS-box family gene with MIKCc type-box, expressed -
6 Sobic.010G212700 tetraspanin family protein, putative, expressed -
7 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
8 Sobic.001G137400 ankyrin, putative, expressed -
9 Sobic.004G218000 SET domain containing protein, expressed -
10 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
11 Sobic.004G234600 expressed protein -
12 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
13 Sobic.003G027200 plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.001G377600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
15 Sobic.003G029900 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
16 Sobic.004G220200 expressed protein -
17 Sobic.009G042600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -
20 Sobic.002G053350 - -


Gene co-expression network
sample Sobic003G022900 Sobic003G022900 Sobic001G171100 Sobic001G171100 Sobic003G022900--Sobic001G171100 Sobic006G097300 Sobic006G097300 Sobic003G022900--Sobic006G097300 Sobic001G171200 Sobic001G171200 Sobic003G022900--Sobic001G171200 Sobic007G193300 Sobic007G193300 Sobic003G022900--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic003G022900--Sobic008G072900 Sobic010G212700 Sobic010G212700 Sobic003G022900--Sobic010G212700 Sobic006G066400 Sobic006G066400 Sobic003G022900--Sobic006G066400 Sobic001G137400 Sobic001G137400 Sobic003G022900--Sobic001G137400 Sobic004G218000 Sobic004G218000 Sobic003G022900--Sobic004G218000 Sobic001G171100--Sobic010G212700 Sobic001G171100--Sobic003G022900 Sobic001G377600 Sobic001G377600 Sobic001G171100--Sobic001G377600 Sobic001G171100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic001G171100--Sobic003G027200 Sobic005G164800 Sobic005G164800 Sobic001G171100--Sobic005G164800 Sobic003G029900 Sobic003G029900 Sobic001G171100--Sobic003G029900 Sobic001G171100--Sobic001G171200 Sobic001G171100--Sobic006G097300 Sobic003G381100 Sobic003G381100 Sobic006G097300--Sobic003G381100 Sobic005G166100 Sobic005G166100 Sobic006G097300--Sobic005G166100 Sobic004G234600 Sobic004G234600 Sobic006G097300--Sobic004G234600 Sobic006G097300--Sobic007G193300 Sobic006G097300--Sobic001G171200 Sobic001G216400 Sobic001G216400 Sobic006G097300--Sobic001G216400 Sobic006G097300--Sobic008G072900 Sobic007G128200 Sobic007G128200 Sobic006G097300--Sobic007G128200 Sobic004G281000 Sobic004G281000 Sobic006G097300--Sobic004G281000 Sobic004G220200 Sobic004G220200 Sobic001G171200--Sobic004G220200 Sobic001G171200--Sobic006G097300 Sobic001G171200--Sobic007G128200 Sobic001G171200--Sobic004G234600 Sobic002G121900 Sobic002G121900 Sobic001G171200--Sobic002G121900 Sobic001G171200--Sobic007G193300 Sobic010G194600 Sobic010G194600 Sobic001G171200--Sobic010G194600 Sobic001G086400 Sobic001G086400 Sobic001G171200--Sobic001G086400 Sobic001G457600 Sobic001G457600 Sobic001G171200--Sobic001G457600 Sobic001G137500 Sobic001G137500 Sobic007G193300--Sobic001G137500 Sobic007G193300--Sobic001G216400 Sobic001G419500 Sobic001G419500 Sobic007G193300--Sobic001G419500 Sobic007G193300--Sobic005G166100 Sobic007G193300--Sobic003G381100 Sobic007G193300--Sobic007G128200 Sobic007G193300--Sobic004G234600 Sobic007G193300--Sobic001G457600 Sobic007G193300--Sobic002G121900 Sobic008G072900--Sobic003G027200 Sobic008G072900--Sobic003G381100 Sobic008G072900--Sobic001G377600 Sobic008G072900--Sobic003G029900 Sobic008G072900--Sobic006G097300 Sobic008G072900--Sobic007G193300 Sobic002G239000 Sobic002G239000 Sobic008G072900--Sobic002G239000 Sobic008G072900--Sobic001G171100 Sobic008G072900--Sobic003G022900 Sobic010G212700--Sobic001G171100 Sobic001G468000 Sobic001G468000 Sobic010G212700--Sobic001G468000 Sobic010G212700--Sobic003G022900 Sobic010G212700--Sobic006G066400 Sobic010G180200 Sobic010G180200 Sobic010G212700--Sobic010G180200 Sobic002G196500 Sobic002G196500 Sobic010G212700--Sobic002G196500 Sobic010G212700--Sobic004G218000 Sobic002G374200 Sobic002G374200 Sobic010G212700--Sobic002G374200 Sobic004G014100 Sobic004G014100 Sobic010G212700--Sobic004G014100 Sobic006G066400--Sobic001G468000 Sobic006G066400--Sobic003G022900 Sobic006G066400--Sobic010G212700 Sobic006G066400--Sobic010G180200 Sobic006G066400--Sobic001G171100 Sobic006G066400--Sobic002G196500 Sobic002G366000 Sobic002G366000 Sobic006G066400--Sobic002G366000 Sobic002G244600 Sobic002G244600 Sobic006G066400--Sobic002G244600 Sobic006G272800 Sobic006G272800 Sobic006G066400--Sobic006G272800 Sobic001G137400--Sobic001G137500 Sobic002G258000 Sobic002G258000 Sobic001G137400--Sobic002G258000 Sobic001G137400--Sobic007G193300 Sobic001G137400--Sobic001G457600 Sobic001G137400--Sobic010G194600 Sobic001G288000 Sobic001G288000 Sobic001G137400--Sobic001G288000 Sobic009G243000 Sobic009G243000 Sobic001G137400--Sobic009G243000 Sobic001G137400--Sobic001G086400 Sobic001G137400--Sobic001G419500 Sobic003G217300 Sobic003G217300 Sobic004G218000--Sobic003G217300 Sobic007G056900 Sobic007G056900 Sobic004G218000--Sobic007G056900 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic005G041900 Sobic005G041900 Sobic004G218000--Sobic005G041900 Sobic004G218000--Sobic003G022900 Sobic009G042600 Sobic009G042600 Sobic004G218000--Sobic009G042600 Sobic004G218000--Sobic010G180200
Octagon: transcription factors


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