Gene annotation
Transcriptome id Sobic.008G072900.1
Synonym Sb08g006460, AGL5, SHP2
Functional annotation OsMADS13 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5YTL7
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF205
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G42830 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os12g10540.4 : OsMADS13 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a025641 , Zm00025a043140 , Zm00025a054447 , Zm00025a022983 , Zm00025a035864
Brachypodium PNT65319 , PNT71641 , PNT65321 , KQK03211 , KQK03210 , KQK03213 , KQK03212 , KQJ91889 , KQK07077 , KQK07076 , KQK07078 , PNT65320
Barley HORVU1Hr1G029220.8 , HORVU1Hr1G029220.9 , HORVU1Hr1G029220.2 , HORVU1Hr1G029220.3 , HORVU1Hr1G029220.1 , HORVU1Hr1G029220.6 , HORVU1Hr1G029220.7 , HORVU1Hr1G029220.5 , HORVU3Hr1G026650.1 , HORVU3Hr1G026650.2 , HORVU3Hr1G026650.3 , HORVU3Hr1G026650.4 , HORVU3Hr1G026650.5 , HORVU3Hr1G026650.6 , HORVU3Hr1G026650.7 , HORVU3Hr1G026650.8 , HORVU3Hr1G026650.9 , HORVU1Hr1G029220.10 , HORVU1Hr1G029220.11 , HORVU1Hr1G029220.12 , HORVU1Hr1G029220.13 , HORVU7Hr1G076310.14 , HORVU7Hr1G076310.15 , HORVU7Hr1G076310.12 , HORVU1Hr1G023620.12 , HORVU1Hr1G023620.13 , HORVU1Hr1G023620.11 , HORVU1Hr1G023620.16 , HORVU1Hr1G023620.14 , HORVU1Hr1G023620.15 , HORVU1Hr1G023620.1 , HORVU1Hr1G023620.8 , HORVU1Hr1G023620.9 , HORVU1Hr1G023620.2 , HORVU1Hr1G023620.3 , HORVU1Hr1G023620.4 , HORVU1Hr1G023620.5 , HORVU3Hr1G026650.12 , HORVU3Hr1G026650.13 , HORVU3Hr1G026650.10 , HORVU3Hr1G026650.11 , HORVU7Hr1G076310.8 , HORVU7Hr1G076310.9 , HORVU7Hr1G076310.4 , HORVU7Hr1G076310.5 , HORVU7Hr1G076310.6 , HORVU7Hr1G076310.7 , HORVU7Hr1G076310.1 , HORVU7Hr1G076310.2 , HORVU7Hr1G076310.3
Wheat TraesCS5A02G117500 , TraesCS5A02G117500 , TraesCS7A02G319400 , TraesCS7A02G319400 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS3A02G314300 , TraesCS3A02G314300 , TraesCS3A02G314300 , TraesCS7D02G315900 , TraesCS7D02G315900 , TraesCS7D02G315900 , TraesCS5D02G118200 , TraesCS5D02G118200 , TraesCS1D02G127700 , TraesCS1D02G127700 , TraesCS1B02G144800 , TraesCS1B02G144800 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS5B02G115100 , TraesCS5B02G115100 , TraesCS1A02G125800 , TraesCS1A02G125800
Populus -


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cDNA sequences
Sobic.008G072900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G027200 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -
3 Sobic.001G377600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
4 Sobic.003G029900 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
5 Sobic.006G097300 F-box protein FBW2, putative, expressed -
6 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
7 Sobic.002G239000 plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.001G171100 expressed protein -
9 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
10 Sobic.010G067200 receptor-like protein kinase precursor, putative, expressed -
11 Sobic.010G118900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
12 Sobic.004G056000 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed -
13 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
14 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
15 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
16 Sobic.007G043000 transcription factor X1, putative, expressed -
17 Sobic.004G294600 expressed protein -
18 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
19 Sobic.004G234600 expressed protein -
20 Sobic.001G287900 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42


Gene co-expression network
sample Sobic008G072900 Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic008G072900--Sobic003G027200 Sobic003G381100 Sobic003G381100 Sobic008G072900--Sobic003G381100 Sobic001G377600 Sobic001G377600 Sobic008G072900--Sobic001G377600 Sobic003G029900 Sobic003G029900 Sobic008G072900--Sobic003G029900 Sobic006G097300 Sobic006G097300 Sobic008G072900--Sobic006G097300 Sobic007G193300 Sobic007G193300 Sobic008G072900--Sobic007G193300 Sobic002G239000 Sobic002G239000 Sobic008G072900--Sobic002G239000 Sobic001G171100 Sobic001G171100 Sobic008G072900--Sobic001G171100 Sobic003G022900 Sobic003G022900 Sobic008G072900--Sobic003G022900 Sobic003G027200--Sobic008G072900 Sobic003G027200--Sobic003G381100 Sobic003G027200--Sobic001G377600 Sobic003G027200--Sobic003G029900 Sobic010G118900 Sobic010G118900 Sobic003G027200--Sobic010G118900 Sobic003G027200--Sobic006G097300 Sobic001G287900 Sobic001G287900 Sobic003G027200--Sobic001G287900 Sobic003G027200--Sobic007G193300 Sobic003G027200--Sobic002G239000 Sobic004G056000 Sobic004G056000 Sobic003G381100--Sobic004G056000 Sobic001G216400 Sobic001G216400 Sobic003G381100--Sobic001G216400 Sobic003G381100--Sobic008G072900 Sobic003G381100--Sobic003G027200 Sobic003G381100--Sobic006G097300 Sobic004G254100 Sobic004G254100 Sobic003G381100--Sobic004G254100 Sobic007G043000 Sobic007G043000 Sobic003G381100--Sobic007G043000 Sobic005G166100 Sobic005G166100 Sobic003G381100--Sobic005G166100 Sobic003G381100--Sobic007G193300 Sobic001G377600--Sobic003G029900 Sobic001G377600--Sobic008G072900 Sobic001G377600--Sobic003G027200 Sobic004G294600 Sobic004G294600 Sobic001G377600--Sobic004G294600 Sobic001G377600--Sobic001G171100 Sobic006G250200 Sobic006G250200 Sobic001G377600--Sobic006G250200 Sobic005G164800 Sobic005G164800 Sobic001G377600--Sobic005G164800 Sobic010G067200 Sobic010G067200 Sobic001G377600--Sobic010G067200 Sobic001G377600--Sobic003G381100 Sobic003G029900--Sobic001G377600 Sobic003G029900--Sobic008G072900 Sobic003G029900--Sobic003G027200 Sobic003G029900--Sobic004G294600 Sobic003G029900--Sobic001G171100 Sobic003G029900--Sobic010G067200 Sobic007G128400 Sobic007G128400 Sobic003G029900--Sobic007G128400 Sobic003G029900--Sobic003G022900 Sobic003G029900--Sobic006G250200 Sobic006G097300--Sobic003G381100 Sobic006G097300--Sobic005G166100 Sobic004G234600 Sobic004G234600 Sobic006G097300--Sobic004G234600 Sobic006G097300--Sobic007G193300 Sobic001G171200 Sobic001G171200 Sobic006G097300--Sobic001G171200 Sobic006G097300--Sobic001G216400 Sobic006G097300--Sobic008G072900 Sobic007G128200 Sobic007G128200 Sobic006G097300--Sobic007G128200 Sobic004G281000 Sobic004G281000 Sobic006G097300--Sobic004G281000 Sobic001G137500 Sobic001G137500 Sobic007G193300--Sobic001G137500 Sobic007G193300--Sobic001G216400 Sobic001G419500 Sobic001G419500 Sobic007G193300--Sobic001G419500 Sobic007G193300--Sobic005G166100 Sobic007G193300--Sobic003G381100 Sobic007G193300--Sobic007G128200 Sobic007G193300--Sobic004G234600 Sobic001G457600 Sobic001G457600 Sobic007G193300--Sobic001G457600 Sobic002G121900 Sobic002G121900 Sobic007G193300--Sobic002G121900 Sobic002G239000--Sobic003G381100 Sobic002G239000--Sobic004G254100 Sobic002G239000--Sobic007G043000 Sobic003G063700 Sobic003G063700 Sobic002G239000--Sobic003G063700 Sobic002G239000--Sobic008G072900 Sobic002G239000--Sobic003G027200 Sobic002G239000--Sobic001G216400 Sobic009G211300 Sobic009G211300 Sobic002G239000--Sobic009G211300 Sobic002G239000--Sobic004G056000 Sobic010G212700 Sobic010G212700 Sobic001G171100--Sobic010G212700 Sobic001G171100--Sobic003G022900 Sobic001G171100--Sobic001G377600 Sobic001G171100--Sobic008G072900 Sobic001G171100--Sobic003G027200 Sobic001G171100--Sobic005G164800 Sobic001G171100--Sobic003G029900 Sobic001G171100--Sobic001G171200 Sobic001G171100--Sobic006G097300 Sobic003G022900--Sobic001G171100 Sobic003G022900--Sobic006G097300 Sobic003G022900--Sobic001G171200 Sobic003G022900--Sobic007G193300 Sobic003G022900--Sobic008G072900 Sobic003G022900--Sobic010G212700 Sobic006G066400 Sobic006G066400 Sobic003G022900--Sobic006G066400 Sobic001G137400 Sobic001G137400 Sobic003G022900--Sobic001G137400 Sobic004G218000 Sobic004G218000 Sobic003G022900--Sobic004G218000
Octagon: transcription factors


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