Gene annotation
Transcriptome id Sobic.005G164800.1
Synonym PUM12, Sb05g022550, APUM12
Functional annotation pumilio-family RNA binding repeat domain containing protein, expressed
UniProt C5Y4Z7
Pfam PF00806
Panther DB PTHR12537 PTHR12537:SF13
NCBI CDD KOG2049; Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily)
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G56510 : pumilio 12
RAP-DB (Rice) LOC_Os11g37090.1 : pumilio-family RNA binding repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033894
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G217300 zinc finger, C3HC4 type family protein, expressed -
2 Sobic.004G218000 SET domain containing protein, expressed -
3 Sobic.001G171100 expressed protein -
4 Sobic.001G377600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
5 Sobic.010G067200 receptor-like protein kinase precursor, putative, expressed -
6 Sobic.003G027200 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
8 Sobic.008G072900 OsMADS13 - MADS-box family gene with MIKCc type-box, expressed -
9 Sobic.007G191200 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
10 Sobic.002G238900 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.010G118900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
12 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
13 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
14 Sobic.001G081800 GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
15 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
16 Sobic.002G259301 - K15382: SLC50A, solute carrier family 50 (sugar transporter)
17 Sobic.005G041900 - -
18 Sobic.006G250200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
19 Sobic.009G042600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G171200 expressed protein -


Gene co-expression network
sample Sobic005G164800 Sobic005G164800 Sobic003G217300 Sobic003G217300 Sobic005G164800--Sobic003G217300 Sobic004G218000 Sobic004G218000 Sobic005G164800--Sobic004G218000 Sobic001G171100 Sobic001G171100 Sobic005G164800--Sobic001G171100 Sobic001G377600 Sobic001G377600 Sobic005G164800--Sobic001G377600 Sobic010G067200 Sobic010G067200 Sobic005G164800--Sobic010G067200 Sobic003G027200 Sobic003G027200 Sobic005G164800--Sobic003G027200 Sobic007G193300 Sobic007G193300 Sobic005G164800--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic005G164800--Sobic008G072900 Sobic007G191200 Sobic007G191200 Sobic005G164800--Sobic007G191200 Sobic003G217300--Sobic004G218000 Sobic003G217300--Sobic005G164800 Sobic007G056900 Sobic007G056900 Sobic003G217300--Sobic007G056900 Sobic003G217300--Sobic010G067200 Sobic005G041900 Sobic005G041900 Sobic003G217300--Sobic005G041900 Sobic009G042600 Sobic009G042600 Sobic003G217300--Sobic009G042600 Sobic002G259301 Sobic002G259301 Sobic003G217300--Sobic002G259301 Sobic002G221100 Sobic002G221100 Sobic003G217300--Sobic002G221100 Sobic003G217300--Sobic007G193300 Sobic004G218000--Sobic003G217300 Sobic004G218000--Sobic007G056900 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic004G218000--Sobic002G221100 Sobic004G218000--Sobic005G041900 Sobic003G022900 Sobic003G022900 Sobic004G218000--Sobic003G022900 Sobic004G218000--Sobic009G042600 Sobic010G180200 Sobic010G180200 Sobic004G218000--Sobic010G180200 Sobic010G212700 Sobic010G212700 Sobic001G171100--Sobic010G212700 Sobic001G171100--Sobic003G022900 Sobic001G171100--Sobic001G377600 Sobic001G171100--Sobic008G072900 Sobic001G171100--Sobic003G027200 Sobic001G171100--Sobic005G164800 Sobic003G029900 Sobic003G029900 Sobic001G171100--Sobic003G029900 Sobic001G171200 Sobic001G171200 Sobic001G171100--Sobic001G171200 Sobic006G097300 Sobic006G097300 Sobic001G171100--Sobic006G097300 Sobic001G377600--Sobic003G029900 Sobic001G377600--Sobic008G072900 Sobic001G377600--Sobic003G027200 Sobic004G294600 Sobic004G294600 Sobic001G377600--Sobic004G294600 Sobic001G377600--Sobic001G171100 Sobic006G250200 Sobic006G250200 Sobic001G377600--Sobic006G250200 Sobic001G377600--Sobic005G164800 Sobic001G377600--Sobic010G067200 Sobic003G381100 Sobic003G381100 Sobic001G377600--Sobic003G381100 Sobic010G067200--Sobic005G164800 Sobic010G067200--Sobic008G072900 Sobic010G067200--Sobic003G029900 Sobic010G067200--Sobic001G377600 Sobic010G067200--Sobic004G294600 Sobic010G067200--Sobic001G171100 Sobic010G067200--Sobic003G027200 Sobic010G067200--Sobic003G217300 Sobic010G067200--Sobic004G218000 Sobic003G027200--Sobic008G072900 Sobic003G027200--Sobic003G381100 Sobic003G027200--Sobic001G377600 Sobic003G027200--Sobic003G029900 Sobic010G118900 Sobic010G118900 Sobic003G027200--Sobic010G118900 Sobic003G027200--Sobic006G097300 Sobic001G287900 Sobic001G287900 Sobic003G027200--Sobic001G287900 Sobic003G027200--Sobic007G193300 Sobic002G239000 Sobic002G239000 Sobic003G027200--Sobic002G239000 Sobic001G137500 Sobic001G137500 Sobic007G193300--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic007G193300--Sobic001G216400 Sobic001G419500 Sobic001G419500 Sobic007G193300--Sobic001G419500 Sobic005G166100 Sobic005G166100 Sobic007G193300--Sobic005G166100 Sobic007G193300--Sobic003G381100 Sobic007G128200 Sobic007G128200 Sobic007G193300--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic007G193300--Sobic004G234600 Sobic001G457600 Sobic001G457600 Sobic007G193300--Sobic001G457600 Sobic002G121900 Sobic002G121900 Sobic007G193300--Sobic002G121900 Sobic008G072900--Sobic003G027200 Sobic008G072900--Sobic003G381100 Sobic008G072900--Sobic001G377600 Sobic008G072900--Sobic003G029900 Sobic008G072900--Sobic006G097300 Sobic008G072900--Sobic007G193300 Sobic008G072900--Sobic002G239000 Sobic008G072900--Sobic001G171100 Sobic008G072900--Sobic003G022900 Sobic005G042400 Sobic005G042400 Sobic007G191200--Sobic005G042400 Sobic010G029800 Sobic010G029800 Sobic007G191200--Sobic010G029800 Sobic005G124400 Sobic005G124400 Sobic007G191200--Sobic005G124400 Sobic004G008700 Sobic004G008700 Sobic007G191200--Sobic004G008700 Sobic010G137600 Sobic010G137600 Sobic007G191200--Sobic010G137600 Sobic005G052200 Sobic005G052200 Sobic007G191200--Sobic005G052200 Sobic008G069000 Sobic008G069000 Sobic007G191200--Sobic008G069000 Sobic004G114700 Sobic004G114700 Sobic007G191200--Sobic004G114700 Sobic003G103100 Sobic003G103100 Sobic007G191200--Sobic003G103100
Octagon: transcription factors


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