Gene annotation
Transcriptome id Sobic.003G217300.2
Synonym Sb03g027620
Functional annotation zinc finger, C3HC4 type family protein, expressed
UniProt A0A1W0VYF0
Pfam PF12906
Panther DB PTHR23012 PTHR23012:SF54
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G11020 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os08g29590.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G217300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G218000 SET domain containing protein, expressed -
2 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
3 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
4 Sobic.010G067200 receptor-like protein kinase precursor, putative, expressed -
5 Sobic.005G041900 - -
6 Sobic.009G042600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G259301 - K15382: SLC50A, solute carrier family 50 (sugar transporter)
8 Sobic.002G221100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
10 Sobic.001G377600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
11 Sobic.001G171100 expressed protein -
12 Sobic.003G029900 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
13 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
14 Sobic.002G061800 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
15 Sobic.008G072900 OsMADS13 - MADS-box family gene with MIKCc type-box, expressed -
16 Sobic.003G027200 plastocyanin-like domain containing protein, putative, expressed -
17 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
18 Sobic.010G193700 expressed protein -
19 Sobic.002G147466 - -
20 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3


Gene co-expression network
sample Sobic003G217300 Sobic003G217300 Sobic004G218000 Sobic004G218000 Sobic003G217300--Sobic004G218000 Sobic005G164800 Sobic005G164800 Sobic003G217300--Sobic005G164800 Sobic007G056900 Sobic007G056900 Sobic003G217300--Sobic007G056900 Sobic010G067200 Sobic010G067200 Sobic003G217300--Sobic010G067200 Sobic005G041900 Sobic005G041900 Sobic003G217300--Sobic005G041900 Sobic009G042600 Sobic009G042600 Sobic003G217300--Sobic009G042600 Sobic002G259301 Sobic002G259301 Sobic003G217300--Sobic002G259301 Sobic002G221100 Sobic002G221100 Sobic003G217300--Sobic002G221100 Sobic007G193300 Sobic007G193300 Sobic003G217300--Sobic007G193300 Sobic004G218000--Sobic003G217300 Sobic004G218000--Sobic007G056900 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic004G218000--Sobic002G221100 Sobic004G218000--Sobic005G041900 Sobic003G022900 Sobic003G022900 Sobic004G218000--Sobic003G022900 Sobic004G218000--Sobic009G042600 Sobic010G180200 Sobic010G180200 Sobic004G218000--Sobic010G180200 Sobic005G164800--Sobic003G217300 Sobic005G164800--Sobic004G218000 Sobic001G171100 Sobic001G171100 Sobic005G164800--Sobic001G171100 Sobic001G377600 Sobic001G377600 Sobic005G164800--Sobic001G377600 Sobic005G164800--Sobic010G067200 Sobic003G027200 Sobic003G027200 Sobic005G164800--Sobic003G027200 Sobic005G164800--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic005G164800--Sobic008G072900 Sobic007G191200 Sobic007G191200 Sobic005G164800--Sobic007G191200 Sobic007G056900--Sobic004G218000 Sobic007G056900--Sobic005G164800 Sobic007G056900--Sobic003G217300 Sobic002G061800 Sobic002G061800 Sobic007G056900--Sobic002G061800 Sobic006G143300 Sobic006G143300 Sobic007G056900--Sobic006G143300 Sobic007G056900--Sobic005G041900 Sobic001G132200 Sobic001G132200 Sobic007G056900--Sobic001G132200 Sobic007G056900--Sobic009G042600 Sobic006G062600 Sobic006G062600 Sobic007G056900--Sobic006G062600 Sobic010G067200--Sobic005G164800 Sobic010G067200--Sobic008G072900 Sobic003G029900 Sobic003G029900 Sobic010G067200--Sobic003G029900 Sobic010G067200--Sobic001G377600 Sobic004G294600 Sobic004G294600 Sobic010G067200--Sobic004G294600 Sobic010G067200--Sobic001G171100 Sobic010G067200--Sobic003G027200 Sobic010G067200--Sobic003G217300 Sobic010G067200--Sobic004G218000 Sobic005G041900--Sobic004G218000 Sobic005G041900--Sobic005G164800 Sobic005G041900--Sobic007G056900 Sobic005G041900--Sobic003G217300 Sobic010G193700 Sobic010G193700 Sobic005G041900--Sobic010G193700 Sobic002G174500 Sobic002G174500 Sobic005G041900--Sobic002G174500 Sobic010G109300 Sobic010G109300 Sobic005G041900--Sobic010G109300 Sobic002G354800 Sobic002G354800 Sobic005G041900--Sobic002G354800 Sobic003G027000 Sobic003G027000 Sobic005G041900--Sobic003G027000 Sobic001G137400 Sobic001G137400 Sobic009G042600--Sobic001G137400 Sobic009G042600--Sobic004G218000 Sobic001G457600 Sobic001G457600 Sobic009G042600--Sobic001G457600 Sobic009G042600--Sobic007G193300 Sobic009G042600--Sobic003G022900 Sobic009G042600--Sobic002G061800 Sobic009G042600--Sobic005G164800 Sobic006G097300 Sobic006G097300 Sobic009G042600--Sobic006G097300 Sobic009G042600--Sobic003G217300 Sobic002G299200 Sobic002G299200 Sobic002G259301--Sobic002G299200 Sobic003G142200 Sobic003G142200 Sobic002G259301--Sobic003G142200 Sobic002G259301--Sobic007G193300 Sobic002G259301--Sobic005G164800 Sobic001G288000 Sobic001G288000 Sobic002G259301--Sobic001G288000 Sobic007G205300 Sobic007G205300 Sobic002G259301--Sobic007G205300 Sobic001G287900 Sobic001G287900 Sobic002G259301--Sobic001G287900 Sobic002G259301--Sobic003G217300 Sobic002G259301--Sobic003G027000 Sobic002G221100--Sobic002G349000 Sobic002G212400 Sobic002G212400 Sobic002G221100--Sobic002G212400 Sobic002G221100--Sobic004G218000 Sobic003G057650 Sobic003G057650 Sobic002G221100--Sobic003G057650 Sobic002G360900 Sobic002G360900 Sobic002G221100--Sobic002G360900 Sobic001G324800 Sobic001G324800 Sobic002G221100--Sobic001G324800 Sobic009G156200 Sobic009G156200 Sobic002G221100--Sobic009G156200 Sobic003G042200 Sobic003G042200 Sobic002G221100--Sobic003G042200 Sobic005G109800 Sobic005G109800 Sobic002G221100--Sobic005G109800 Sobic001G137500 Sobic001G137500 Sobic007G193300--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic007G193300--Sobic001G216400 Sobic001G419500 Sobic001G419500 Sobic007G193300--Sobic001G419500 Sobic005G166100 Sobic005G166100 Sobic007G193300--Sobic005G166100 Sobic003G381100 Sobic003G381100 Sobic007G193300--Sobic003G381100 Sobic007G128200 Sobic007G128200 Sobic007G193300--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic007G193300--Sobic004G234600 Sobic007G193300--Sobic001G457600 Sobic002G121900 Sobic002G121900 Sobic007G193300--Sobic002G121900
Octagon: transcription factors


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