Gene annotation
Transcriptome id Sobic.010G212700.1
Synonym TET8, Sb10g025930
Functional annotation tetraspanin family protein, putative, expressed
UniProt C5Z761
Pfam PF00335
Panther DB PTHR32191 PTHR32191:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G28050 : tetraspanin7
RAP-DB (Rice) LOC_Os06g44310.1 : tetraspanin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a038197 , Zm00025a051637 , Zm00025a047075
Brachypodium KQK16868 , KQK02441
Barley HORVU7Hr1G112410.2 , HORVU7Hr1G112410.3 , HORVU7Hr1G112410.1
Wheat TraesCS7D02G488300 , TraesCS7A02G500900 , TraesCS7B02G408200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G212700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G171100 expressed protein -
2 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
3 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
4 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
5 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
6 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
7 Sobic.004G218000 SET domain containing protein, expressed -
8 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
9 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
10 Sobic.003G208800 aspartic proteinase, putative, expressed -
11 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
12 Sobic.001G171200 expressed protein -
13 Sobic.001G123300 Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed K05350: beta-glucosidase
14 Sobic.008G072900 OsMADS13 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
16 Sobic.003G029900 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
17 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
18 Sobic.003G027200 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.002G221100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A


Gene co-expression network
sample Sobic010G212700 Sobic010G212700 Sobic001G171100 Sobic001G171100 Sobic010G212700--Sobic001G171100 Sobic001G468000 Sobic001G468000 Sobic010G212700--Sobic001G468000 Sobic003G022900 Sobic003G022900 Sobic010G212700--Sobic003G022900 Sobic006G066400 Sobic006G066400 Sobic010G212700--Sobic006G066400 Sobic010G180200 Sobic010G180200 Sobic010G212700--Sobic010G180200 Sobic002G196500 Sobic002G196500 Sobic010G212700--Sobic002G196500 Sobic004G218000 Sobic004G218000 Sobic010G212700--Sobic004G218000 Sobic002G374200 Sobic002G374200 Sobic010G212700--Sobic002G374200 Sobic004G014100 Sobic004G014100 Sobic010G212700--Sobic004G014100 Sobic001G171100--Sobic010G212700 Sobic001G171100--Sobic003G022900 Sobic001G377600 Sobic001G377600 Sobic001G171100--Sobic001G377600 Sobic008G072900 Sobic008G072900 Sobic001G171100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic001G171100--Sobic003G027200 Sobic005G164800 Sobic005G164800 Sobic001G171100--Sobic005G164800 Sobic003G029900 Sobic003G029900 Sobic001G171100--Sobic003G029900 Sobic001G171200 Sobic001G171200 Sobic001G171100--Sobic001G171200 Sobic006G097300 Sobic006G097300 Sobic001G171100--Sobic006G097300 Sobic001G468000--Sobic006G066400 Sobic001G468000--Sobic010G212700 Sobic006G272800 Sobic006G272800 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic002G284100 Sobic002G284100 Sobic001G468000--Sobic002G284100 Sobic001G158300 Sobic001G158300 Sobic001G468000--Sobic001G158300 Sobic001G468000--Sobic010G180200 Sobic002G302600 Sobic002G302600 Sobic001G468000--Sobic002G302600 Sobic001G468000--Sobic001G171100 Sobic003G022900--Sobic001G171100 Sobic003G022900--Sobic006G097300 Sobic003G022900--Sobic001G171200 Sobic007G193300 Sobic007G193300 Sobic003G022900--Sobic007G193300 Sobic003G022900--Sobic008G072900 Sobic003G022900--Sobic010G212700 Sobic003G022900--Sobic006G066400 Sobic001G137400 Sobic001G137400 Sobic003G022900--Sobic001G137400 Sobic003G022900--Sobic004G218000 Sobic006G066400--Sobic001G468000 Sobic006G066400--Sobic003G022900 Sobic006G066400--Sobic010G212700 Sobic006G066400--Sobic010G180200 Sobic006G066400--Sobic001G171100 Sobic006G066400--Sobic002G196500 Sobic002G366000 Sobic002G366000 Sobic006G066400--Sobic002G366000 Sobic002G244600 Sobic002G244600 Sobic006G066400--Sobic002G244600 Sobic006G066400--Sobic006G272800 Sobic003G402100 Sobic003G402100 Sobic010G180200--Sobic003G402100 Sobic001G053700 Sobic001G053700 Sobic010G180200--Sobic001G053700 Sobic001G324800 Sobic001G324800 Sobic010G180200--Sobic001G324800 Sobic010G180200--Sobic006G066400 Sobic010G180200--Sobic004G014100 Sobic001G394900 Sobic001G394900 Sobic010G180200--Sobic001G394900 Sobic007G023600 Sobic007G023600 Sobic010G180200--Sobic007G023600 Sobic010G180200--Sobic004G218000 Sobic010G180200--Sobic010G212700 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic002G196500--Sobic001G468000 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200 Sobic003G217300 Sobic003G217300 Sobic004G218000--Sobic003G217300 Sobic007G056900 Sobic007G056900 Sobic004G218000--Sobic007G056900 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic005G041900 Sobic005G041900 Sobic004G218000--Sobic005G041900 Sobic004G218000--Sobic003G022900 Sobic009G042600 Sobic009G042600 Sobic004G218000--Sobic009G042600 Sobic004G218000--Sobic010G180200 Sobic002G374200--Sobic010G212700 Sobic001G500500 Sobic001G500500 Sobic002G374200--Sobic001G500500 Sobic010G237800 Sobic010G237800 Sobic002G374200--Sobic010G237800 Sobic003G007200 Sobic003G007200 Sobic002G374200--Sobic003G007200 Sobic007G153700 Sobic007G153700 Sobic002G374200--Sobic007G153700 Sobic005G160200 Sobic005G160200 Sobic002G374200--Sobic005G160200 Sobic009G232500 Sobic009G232500 Sobic002G374200--Sobic009G232500 Sobic003G410200 Sobic003G410200 Sobic002G374200--Sobic003G410200 Sobic002G374200--Sobic002G196500 Sobic002G343000 Sobic002G343000 Sobic004G014100--Sobic002G343000 Sobic006G200901 Sobic006G200901 Sobic004G014100--Sobic006G200901 Sobic004G014100--Sobic005G160200 Sobic006G143300 Sobic006G143300 Sobic004G014100--Sobic006G143300 Sobic003G343200 Sobic003G343200 Sobic004G014100--Sobic003G343200 Sobic004G014100--Sobic002G349000 Sobic002G230400 Sobic002G230400 Sobic004G014100--Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.