Gene annotation
Transcriptome id Sobic.002G374200.2
Synonym NRPE9A, NRPB9A, NRPD9A, Sb02g039195
Functional annotation DNA-directed RNA polymerase II subunit RPB9, putative, expressed
UniProt A0A1W0W763
Pfam PF01096 PF02150
Panther DB PTHR11239 PTHR11239:SF16
NCBI CDD KOG2691; RNA polymerase II subunit 9
KEGG Orthology K03017; RPB9, DNA-directed RNA polymerase II subunit RPB9
Gene Ontology GO:0008270; zinc ion binding GO:0006351transcription, DNA-templated GO:0003676nucleic acid binding GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G16980 : RNA polymerases M/15 Kd subunit
RAP-DB (Rice) LOC_Os07g42395.1 : DNA-directed RNA polymerase II subunit RPB9, putative, expressed
MaizeGDB (Corn) Zm00025a048756
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G212700 tetraspanin family protein, putative, expressed -
2 Sobic.001G500500 expressed protein -
3 Sobic.010G237800 ZOS1-21 - C2H2 zinc finger protein, expressed -
4 Sobic.003G007200 aquaporin protein, putative, expressed K09873: aquaporin TIP
5 Sobic.007G153700 transcription regulator, putative, expressed -
6 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
7 Sobic.009G232500 expressed protein -
8 Sobic.003G410200 ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed K04649: HIP2, ubiquitin-conjugating enzyme (huntingtin interacting protein 2)
9 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
10 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
11 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
12 Sobic.010G222800 expressed protein -
13 Sobic.005G032400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
14 Sobic.003G297200 lipase, putative, expressed -
15 Sobic.003G382100 PHD finger protein, putative, expressed -
16 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
17 Sobic.001G196800 CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
18 Sobic.007G081900 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
19 Sobic.001G171100 expressed protein -
20 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G374200 Sobic002G374200 Sobic010G212700 Sobic010G212700 Sobic002G374200--Sobic010G212700 Sobic001G500500 Sobic001G500500 Sobic002G374200--Sobic001G500500 Sobic010G237800 Sobic010G237800 Sobic002G374200--Sobic010G237800 Sobic003G007200 Sobic003G007200 Sobic002G374200--Sobic003G007200 Sobic007G153700 Sobic007G153700 Sobic002G374200--Sobic007G153700 Sobic005G160200 Sobic005G160200 Sobic002G374200--Sobic005G160200 Sobic009G232500 Sobic009G232500 Sobic002G374200--Sobic009G232500 Sobic003G410200 Sobic003G410200 Sobic002G374200--Sobic003G410200 Sobic002G196500 Sobic002G196500 Sobic002G374200--Sobic002G196500 Sobic001G171100 Sobic001G171100 Sobic010G212700--Sobic001G171100 Sobic001G468000 Sobic001G468000 Sobic010G212700--Sobic001G468000 Sobic003G022900 Sobic003G022900 Sobic010G212700--Sobic003G022900 Sobic006G066400 Sobic006G066400 Sobic010G212700--Sobic006G066400 Sobic010G180200 Sobic010G180200 Sobic010G212700--Sobic010G180200 Sobic010G212700--Sobic002G196500 Sobic004G218000 Sobic004G218000 Sobic010G212700--Sobic004G218000 Sobic010G212700--Sobic002G374200 Sobic004G014100 Sobic004G014100 Sobic010G212700--Sobic004G014100 Sobic001G137400 Sobic001G137400 Sobic001G500500--Sobic001G137400 Sobic001G288000 Sobic001G288000 Sobic001G500500--Sobic001G288000 Sobic008G098700 Sobic008G098700 Sobic001G500500--Sobic008G098700 Sobic010G243100 Sobic010G243100 Sobic001G500500--Sobic010G243100 Sobic003G289700 Sobic003G289700 Sobic001G500500--Sobic003G289700 Sobic006G215800 Sobic006G215800 Sobic001G500500--Sobic006G215800 Sobic001G500500--Sobic002G374200 Sobic002G299200 Sobic002G299200 Sobic001G500500--Sobic002G299200 Sobic004G313400 Sobic004G313400 Sobic001G500500--Sobic004G313400 Sobic010G237800--Sobic003G289700 Sobic008G070700 Sobic008G070700 Sobic010G237800--Sobic008G070700 Sobic001G158300 Sobic001G158300 Sobic010G237800--Sobic001G158300 Sobic006G106200 Sobic006G106200 Sobic010G237800--Sobic006G106200 Sobic003G013800 Sobic003G013800 Sobic010G237800--Sobic003G013800 Sobic010G237800--Sobic002G374200 Sobic010G237800--Sobic010G212700 Sobic010G237800--Sobic007G153700 Sobic010G237800--Sobic002G196500 Sobic003G343200 Sobic003G343200 Sobic003G007200--Sobic003G343200 Sobic001G128200 Sobic001G128200 Sobic003G007200--Sobic001G128200 Sobic006G236800 Sobic006G236800 Sobic003G007200--Sobic006G236800 Sobic010G222800 Sobic010G222800 Sobic003G007200--Sobic010G222800 Sobic003G411700 Sobic003G411700 Sobic003G007200--Sobic003G411700 Sobic003G007200--Sobic002G374200 Sobic006G272800 Sobic006G272800 Sobic003G007200--Sobic006G272800 Sobic007G017100 Sobic007G017100 Sobic003G007200--Sobic007G017100 Sobic001G425200 Sobic001G425200 Sobic003G007200--Sobic001G425200 Sobic001G239100 Sobic001G239100 Sobic007G153700--Sobic001G239100 Sobic007G153700--Sobic001G468000 Sobic009G006900 Sobic009G006900 Sobic007G153700--Sobic009G006900 Sobic001G440900 Sobic001G440900 Sobic007G153700--Sobic001G440900 Sobic003G274400 Sobic003G274400 Sobic007G153700--Sobic003G274400 Sobic007G153700--Sobic010G237800 Sobic004G129600 Sobic004G129600 Sobic007G153700--Sobic004G129600 Sobic007G153700--Sobic002G374200 Sobic007G153700--Sobic002G196500 Sobic005G160200--Sobic004G014100 Sobic005G160200--Sobic003G411700 Sobic005G160200--Sobic003G343200 Sobic006G091850 Sobic006G091850 Sobic005G160200--Sobic006G091850 Sobic002G315100 Sobic002G315100 Sobic005G160200--Sobic002G315100 Sobic010G038900 Sobic010G038900 Sobic005G160200--Sobic010G038900 Sobic010G257500 Sobic010G257500 Sobic005G160200--Sobic010G257500 Sobic001G534400 Sobic001G534400 Sobic005G160200--Sobic001G534400 Sobic004G350200 Sobic004G350200 Sobic005G160200--Sobic004G350200 Sobic009G232500--Sobic003G410200 Sobic001G107300 Sobic001G107300 Sobic009G232500--Sobic001G107300 Sobic003G109200 Sobic003G109200 Sobic009G232500--Sobic003G109200 Sobic009G232500--Sobic002G374200 Sobic006G181700 Sobic006G181700 Sobic009G232500--Sobic006G181700 Sobic001G478700 Sobic001G478700 Sobic009G232500--Sobic001G478700 Sobic007G010200 Sobic007G010200 Sobic009G232500--Sobic007G010200 Sobic009G232500--Sobic001G239100 Sobic007G031100 Sobic007G031100 Sobic009G232500--Sobic007G031100 Sobic003G410200--Sobic009G232500 Sobic003G435000 Sobic003G435000 Sobic003G410200--Sobic003G435000 Sobic009G131500 Sobic009G131500 Sobic003G410200--Sobic009G131500 Sobic003G410200--Sobic007G031100 Sobic004G012800 Sobic004G012800 Sobic003G410200--Sobic004G012800 Sobic003G410200--Sobic002G374200 Sobic003G410200--Sobic007G010200 Sobic002G306600 Sobic002G306600 Sobic003G410200--Sobic002G306600 Sobic003G410200--Sobic006G091850 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic002G196500--Sobic001G468000 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200
Octagon: transcription factors


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