Gene annotation
Transcriptome id Sobic.001G196800.1
Synonym CRK3, ATCRK3, Sb01g017320
Functional annotation CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt A0A1B6QJU8
Pfam PF06293
Panther DB PTHR24349 PTHR24349:SF90
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology -
Gene Ontology GO:0016773; phosphotransferase activity, alcohol group as acceptor GO:0016020membrane GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT2G46700 : CDPK-related kinase 3
RAP-DB (Rice) LOC_Os10g36710.1 : CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a023658 , Zm00025a052316 , Zm00025a015299 , Zm00025a006345 , Zm00025a017438 , Zm00025a019204
Brachypodium KQK21574 , KQJ97410
Barley HORVU1Hr1G047350.14 , HORVU1Hr1G047350.16 , HORVU1Hr1G047350.17 , HORVU1Hr1G047350.11 , HORVU1Hr1G047350.18 , HORVU1Hr1G047350.19 , HORVU1Hr1G047350.15 , HORVU1Hr1G047350.10 , HORVU1Hr1G047350.12 , HORVU1Hr1G047350.13 , HORVU1Hr1G047350.8 , HORVU1Hr1G047350.9 , HORVU1Hr1G047350.6 , HORVU1Hr1G047350.7 , HORVU1Hr1G047350.4 , HORVU1Hr1G047350.5 , HORVU1Hr1G047350.2 , HORVU1Hr1G047350.1
Wheat TraesCS1B02G201900 , TraesCS1D02G176900 , TraesCS1A02G178400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G037600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G154200 IQ calmodulin-binding motif domain containing protein, expressed -
3 Sobic.006G272300 pentatricopeptide, putative, expressed -
4 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
5 Sobic.002G100600 ubiquitin family protein, putative, expressed -
6 Sobic.006G072400 DUF584 domain containing protein, putative, expressed -
7 Sobic.010G013400 exosome complex exonuclease rrp4, putative, expressed -
8 Sobic.006G095300 expressed protein -
9 Sobic.010G257500 expressed protein -
10 Sobic.004G340100 PB1 domain containing protein, expressed -
11 Sobic.005G185200 - -
12 Sobic.002G241100 glycosyl transferase 8 domain containing protein, putative, expressed -
13 Sobic.003G294900 expressed protein -
14 Sobic.003G042200 uncharacterized protein At4g06744 precursor, putative, expressed -
15 Sobic.001G534400 - -
16 Sobic.006G100266 - -
17 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
18 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
19 Sobic.004G328100 expressed protein -
20 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -


Gene co-expression network
sample Sobic001G196800 Sobic001G196800 Sobic002G037600 Sobic002G037600 Sobic001G196800--Sobic002G037600 Sobic001G154200 Sobic001G154200 Sobic001G196800--Sobic001G154200 Sobic006G272300 Sobic006G272300 Sobic001G196800--Sobic006G272300 Sobic010G009600 Sobic010G009600 Sobic001G196800--Sobic010G009600 Sobic002G100600 Sobic002G100600 Sobic001G196800--Sobic002G100600 Sobic006G072400 Sobic006G072400 Sobic001G196800--Sobic006G072400 Sobic010G013400 Sobic010G013400 Sobic001G196800--Sobic010G013400 Sobic006G095300 Sobic006G095300 Sobic001G196800--Sobic006G095300 Sobic010G257500 Sobic010G257500 Sobic001G196800--Sobic010G257500 Sobic002G037600--Sobic001G196800 Sobic003G294900 Sobic003G294900 Sobic002G037600--Sobic003G294900 Sobic001G203800 Sobic001G203800 Sobic002G037600--Sobic001G203800 Sobic006G208200 Sobic006G208200 Sobic002G037600--Sobic006G208200 Sobic004G328100 Sobic004G328100 Sobic002G037600--Sobic004G328100 Sobic002G037600--Sobic006G272300 Sobic001G309200 Sobic001G309200 Sobic002G037600--Sobic001G309200 Sobic005G185200 Sobic005G185200 Sobic002G037600--Sobic005G185200 Sobic003G270100 Sobic003G270100 Sobic002G037600--Sobic003G270100 Sobic001G154200--Sobic001G196800 Sobic010G018900 Sobic010G018900 Sobic001G154200--Sobic010G018900 Sobic001G154200--Sobic006G272300 Sobic006G170700 Sobic006G170700 Sobic001G154200--Sobic006G170700 Sobic010G038900 Sobic010G038900 Sobic001G154200--Sobic010G038900 Sobic008G087200 Sobic008G087200 Sobic001G154200--Sobic008G087200 Sobic006G091850 Sobic006G091850 Sobic001G154200--Sobic006G091850 Sobic002G241100 Sobic002G241100 Sobic001G154200--Sobic002G241100 Sobic005G160200 Sobic005G160200 Sobic001G154200--Sobic005G160200 Sobic006G100266 Sobic006G100266 Sobic006G272300--Sobic006G100266 Sobic006G272300--Sobic008G087200 Sobic001G131900 Sobic001G131900 Sobic006G272300--Sobic001G131900 Sobic006G272300--Sobic001G196800 Sobic002G274700 Sobic002G274700 Sobic006G272300--Sobic002G274700 Sobic006G272300--Sobic010G018900 Sobic006G272300--Sobic010G009600 Sobic003G293400 Sobic003G293400 Sobic006G272300--Sobic003G293400 Sobic001G188000 Sobic001G188000 Sobic006G272300--Sobic001G188000 Sobic010G009600--Sobic010G257500 Sobic010G009600--Sobic002G274700 Sobic008G160600 Sobic008G160600 Sobic010G009600--Sobic008G160600 Sobic001G534400 Sobic001G534400 Sobic010G009600--Sobic001G534400 Sobic010G009600--Sobic008G087200 Sobic010G009600--Sobic006G100266 Sobic003G042200 Sobic003G042200 Sobic010G009600--Sobic003G042200 Sobic004G215200 Sobic004G215200 Sobic010G009600--Sobic004G215200 Sobic006G184200 Sobic006G184200 Sobic010G009600--Sobic006G184200 Sobic004G340566 Sobic004G340566 Sobic002G100600--Sobic004G340566 Sobic002G100600--Sobic001G196800 Sobic009G132400 Sobic009G132400 Sobic002G100600--Sobic009G132400 Sobic002G100600--Sobic010G009600 Sobic009G156200 Sobic009G156200 Sobic002G100600--Sobic009G156200 Sobic002G099866 Sobic002G099866 Sobic002G100600--Sobic002G099866 Sobic002G100600--Sobic003G042200 Sobic004G262100 Sobic004G262100 Sobic002G100600--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic002G100600--Sobic001G324800 Sobic004G345100 Sobic004G345100 Sobic006G072400--Sobic004G345100 Sobic006G072400--Sobic001G196800 Sobic003G304500 Sobic003G304500 Sobic006G072400--Sobic003G304500 Sobic004G318400 Sobic004G318400 Sobic006G072400--Sobic004G318400 Sobic004G028800 Sobic004G028800 Sobic006G072400--Sobic004G028800 Sobic004G250600 Sobic004G250600 Sobic006G072400--Sobic004G250600 Sobic004G155300 Sobic004G155300 Sobic006G072400--Sobic004G155300 Sobic006G072400--Sobic001G154200 Sobic005G032400 Sobic005G032400 Sobic006G072400--Sobic005G032400 Sobic010G013400--Sobic010G257500 Sobic010G013400--Sobic010G009600 Sobic008G174500 Sobic008G174500 Sobic010G013400--Sobic008G174500 Sobic004G014100 Sobic004G014100 Sobic010G013400--Sobic004G014100 Sobic010G013400--Sobic003G042200 Sobic010G013400--Sobic001G534400 Sobic010G013400--Sobic001G196800 Sobic001G506300 Sobic001G506300 Sobic010G013400--Sobic001G506300 Sobic002G238800 Sobic002G238800 Sobic010G013400--Sobic002G238800 Sobic006G095300--Sobic001G506300 Sobic003G041400 Sobic003G041400 Sobic006G095300--Sobic003G041400 Sobic006G095300--Sobic001G196800 Sobic006G127200 Sobic006G127200 Sobic006G095300--Sobic006G127200 Sobic001G521100 Sobic001G521100 Sobic006G095300--Sobic001G521100 Sobic010G165800 Sobic010G165800 Sobic006G095300--Sobic010G165800 Sobic002G315400 Sobic002G315400 Sobic006G095300--Sobic002G315400 Sobic006G095300--Sobic010G257500 Sobic003G297200 Sobic003G297200 Sobic006G095300--Sobic003G297200 Sobic010G257500--Sobic010G009600 Sobic003G343200 Sobic003G343200 Sobic010G257500--Sobic003G343200 Sobic010G257500--Sobic001G534400 Sobic010G257500--Sobic006G127200 Sobic010G257500--Sobic010G013400 Sobic010G257500--Sobic010G018900 Sobic002G271400 Sobic002G271400 Sobic010G257500--Sobic002G271400 Sobic010G257500--Sobic004G014100 Sobic010G257500--Sobic010G038900
Octagon: transcription factors


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