Gene annotation
Transcriptome id Sobic.010G013400.2,Sobic.010G013400.1
Synonym RRP4, ATRRP4
Functional annotation exosome complex exonuclease rrp4, putative, expressed
UniProt A0A1W0VR23 , A0A194YGT6
Pfam -
Panther DB PTHR21321 PTHR21321:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding GO:0000178exosome (RNase complex)


Orthologs (automatic annotation)
TAIR AT1G03360 : ribosomal RNA processing 4
RAP-DB (Rice) LOC_Os04g43922.1 : exosome complex exonuclease rrp4, putative, expressed
MaizeGDB (Corn) Zm00025a009440
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G257500 expressed protein -
2 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
3 Sobic.008G174500 expressed protein -
4 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
5 Sobic.003G042200 uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.001G534400 - -
7 Sobic.001G196800 CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.001G506300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
9 Sobic.002G238800 mago nashi, putative, expressed K12877: protein mago nashi
10 Sobic.006G127200 kelch repeat protein, putative, expressed -
11 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
12 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
13 Sobic.001G033300 expansin precursor, putative, expressed -
14 Sobic.002G221100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
16 Sobic.010G038900 expressed protein -
17 Sobic.002G100600 ubiquitin family protein, putative, expressed -
18 Sobic.006G095300 expressed protein -
19 Sobic.006G184200 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
20 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G013400 Sobic010G013400 Sobic010G257500 Sobic010G257500 Sobic010G013400--Sobic010G257500 Sobic010G009600 Sobic010G009600 Sobic010G013400--Sobic010G009600 Sobic008G174500 Sobic008G174500 Sobic010G013400--Sobic008G174500 Sobic004G014100 Sobic004G014100 Sobic010G013400--Sobic004G014100 Sobic003G042200 Sobic003G042200 Sobic010G013400--Sobic003G042200 Sobic001G534400 Sobic001G534400 Sobic010G013400--Sobic001G534400 Sobic001G196800 Sobic001G196800 Sobic010G013400--Sobic001G196800 Sobic001G506300 Sobic001G506300 Sobic010G013400--Sobic001G506300 Sobic002G238800 Sobic002G238800 Sobic010G013400--Sobic002G238800 Sobic010G257500--Sobic010G009600 Sobic003G343200 Sobic003G343200 Sobic010G257500--Sobic003G343200 Sobic010G257500--Sobic001G534400 Sobic006G127200 Sobic006G127200 Sobic010G257500--Sobic006G127200 Sobic010G257500--Sobic010G013400 Sobic010G018900 Sobic010G018900 Sobic010G257500--Sobic010G018900 Sobic002G271400 Sobic002G271400 Sobic010G257500--Sobic002G271400 Sobic010G257500--Sobic004G014100 Sobic010G038900 Sobic010G038900 Sobic010G257500--Sobic010G038900 Sobic010G009600--Sobic010G257500 Sobic002G274700 Sobic002G274700 Sobic010G009600--Sobic002G274700 Sobic008G160600 Sobic008G160600 Sobic010G009600--Sobic008G160600 Sobic010G009600--Sobic001G534400 Sobic008G087200 Sobic008G087200 Sobic010G009600--Sobic008G087200 Sobic006G100266 Sobic006G100266 Sobic010G009600--Sobic006G100266 Sobic010G009600--Sobic003G042200 Sobic004G215200 Sobic004G215200 Sobic010G009600--Sobic004G215200 Sobic006G184200 Sobic006G184200 Sobic010G009600--Sobic006G184200 Sobic008G174500--Sobic003G042200 Sobic003G062101 Sobic003G062101 Sobic008G174500--Sobic003G062101 Sobic001G194100 Sobic001G194100 Sobic008G174500--Sobic001G194100 Sobic008G174500--Sobic006G184200 Sobic008G174500--Sobic010G009600 Sobic009G156200 Sobic009G156200 Sobic008G174500--Sobic009G156200 Sobic008G174500--Sobic004G014100 Sobic010G223500 Sobic010G223500 Sobic008G174500--Sobic010G223500 Sobic008G174500--Sobic006G100266 Sobic002G343000 Sobic002G343000 Sobic004G014100--Sobic002G343000 Sobic006G200901 Sobic006G200901 Sobic004G014100--Sobic006G200901 Sobic005G160200 Sobic005G160200 Sobic004G014100--Sobic005G160200 Sobic006G143300 Sobic006G143300 Sobic004G014100--Sobic006G143300 Sobic004G014100--Sobic003G343200 Sobic002G349000 Sobic002G349000 Sobic004G014100--Sobic002G349000 Sobic002G230400 Sobic002G230400 Sobic004G014100--Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300 Sobic003G042200--Sobic008G174500 Sobic003G042200--Sobic001G194100 Sobic003G042200--Sobic003G062101 Sobic003G042200--Sobic009G156200 Sobic003G042200--Sobic006G184200 Sobic003G379900 Sobic003G379900 Sobic003G042200--Sobic003G379900 Sobic003G042200--Sobic010G009600 Sobic003G042200--Sobic002G349000 Sobic003G042200--Sobic002G238800 Sobic001G534400--Sobic010G257500 Sobic001G534400--Sobic003G343200 Sobic001G534400--Sobic010G009600 Sobic001G534400--Sobic008G087200 Sobic001G534400--Sobic004G014100 Sobic001G534400--Sobic005G160200 Sobic001G534400--Sobic006G184200 Sobic001G534400--Sobic008G174500 Sobic001G534400--Sobic002G271400 Sobic002G037600 Sobic002G037600 Sobic001G196800--Sobic002G037600 Sobic001G154200 Sobic001G154200 Sobic001G196800--Sobic001G154200 Sobic006G272300 Sobic006G272300 Sobic001G196800--Sobic006G272300 Sobic001G196800--Sobic010G009600 Sobic002G100600 Sobic002G100600 Sobic001G196800--Sobic002G100600 Sobic006G072400 Sobic006G072400 Sobic001G196800--Sobic006G072400 Sobic001G196800--Sobic010G013400 Sobic006G095300 Sobic006G095300 Sobic001G196800--Sobic006G095300 Sobic001G196800--Sobic010G257500 Sobic010G087100 Sobic010G087100 Sobic001G506300--Sobic010G087100 Sobic001G506300--Sobic002G238800 Sobic002G131100 Sobic002G131100 Sobic001G506300--Sobic002G131100 Sobic001G506300--Sobic006G095300 Sobic006G081700 Sobic006G081700 Sobic001G506300--Sobic006G081700 Sobic010G030000 Sobic010G030000 Sobic001G506300--Sobic010G030000 Sobic001G118800 Sobic001G118800 Sobic001G506300--Sobic001G118800 Sobic001G506300--Sobic003G379900 Sobic001G506300--Sobic010G257500 Sobic002G238800--Sobic003G379900 Sobic001G081800 Sobic001G081800 Sobic002G238800--Sobic001G081800 Sobic005G172700 Sobic005G172700 Sobic002G238800--Sobic005G172700 Sobic002G238800--Sobic001G506300 Sobic002G238800--Sobic003G042200 Sobic002G238800--Sobic010G087100 Sobic004G218000 Sobic004G218000 Sobic002G238800--Sobic004G218000 Sobic002G238800--Sobic002G354800 Sobic002G238800--Sobic002G349000
Octagon: transcription factors


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