Gene annotation
Transcriptome id Sobic.010G237800.2
Synonym HDT3, HD2C
Functional annotation ZOS1-21 - C2H2 zinc finger protein, expressed
UniProt A0A194YL67
Pfam -
Panther DB PTHR31802 PTHR31802:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22650 : histone deacetylase 2B
RAP-DB (Rice) LOC_Os01g68104.1 : ZOS1-21 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a057979 , Zm00025a040831 , Zm00025a018215 , Zm00025a018213
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G237800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
2 Sobic.008G070700 leafbladeless1, putative, expressed -
3 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
4 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
5 Sobic.003G013800 expressed protein -
6 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
7 Sobic.010G212700 tetraspanin family protein, putative, expressed -
8 Sobic.007G153700 transcription regulator, putative, expressed -
9 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
10 Sobic.001G500500 expressed protein -
11 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
12 Sobic.003G320100 pentatricopeptide containing protein, putative, expressed -
13 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
14 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
15 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
16 Sobic.001G141700 acidic leucine-rich nuclear phosphoprotein 32-related protein 2, putative, expressed K18647: acidic leucine-rich nuclear phosphoprotein 32 family member B
17 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
18 Sobic.001G137400 ankyrin, putative, expressed -
19 Sobic.010G222800 expressed protein -
20 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic010G237800 Sobic010G237800 Sobic003G289700 Sobic003G289700 Sobic010G237800--Sobic003G289700 Sobic008G070700 Sobic008G070700 Sobic010G237800--Sobic008G070700 Sobic001G158300 Sobic001G158300 Sobic010G237800--Sobic001G158300 Sobic006G106200 Sobic006G106200 Sobic010G237800--Sobic006G106200 Sobic003G013800 Sobic003G013800 Sobic010G237800--Sobic003G013800 Sobic002G374200 Sobic002G374200 Sobic010G237800--Sobic002G374200 Sobic010G212700 Sobic010G212700 Sobic010G237800--Sobic010G212700 Sobic007G153700 Sobic007G153700 Sobic010G237800--Sobic007G153700 Sobic002G196500 Sobic002G196500 Sobic010G237800--Sobic002G196500 Sobic005G172700 Sobic005G172700 Sobic003G289700--Sobic005G172700 Sobic003G343200 Sobic003G343200 Sobic003G289700--Sobic003G343200 Sobic010G222800 Sobic010G222800 Sobic003G289700--Sobic010G222800 Sobic003G289700--Sobic010G237800 Sobic003G320100 Sobic003G320100 Sobic003G289700--Sobic003G320100 Sobic003G289700--Sobic006G106200 Sobic009G138300 Sobic009G138300 Sobic003G289700--Sobic009G138300 Sobic010G243100 Sobic010G243100 Sobic003G289700--Sobic010G243100 Sobic005G160200 Sobic005G160200 Sobic003G289700--Sobic005G160200 Sobic006G272800 Sobic006G272800 Sobic008G070700--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic008G070700--Sobic002G112000 Sobic004G267600 Sobic004G267600 Sobic008G070700--Sobic004G267600 Sobic001G439800 Sobic001G439800 Sobic008G070700--Sobic001G439800 Sobic008G070700--Sobic010G222800 Sobic010G092400 Sobic010G092400 Sobic008G070700--Sobic010G092400 Sobic002G317700 Sobic002G317700 Sobic008G070700--Sobic002G317700 Sobic001G175100 Sobic001G175100 Sobic008G070700--Sobic001G175100 Sobic003G393100 Sobic003G393100 Sobic008G070700--Sobic003G393100 Sobic001G158300--Sobic006G272800 Sobic002G284100 Sobic002G284100 Sobic001G158300--Sobic002G284100 Sobic001G158300--Sobic008G070700 Sobic010G003300 Sobic010G003300 Sobic001G158300--Sobic010G003300 Sobic001G468000 Sobic001G468000 Sobic001G158300--Sobic001G468000 Sobic002G027600 Sobic002G027600 Sobic001G158300--Sobic002G027600 Sobic001G158300--Sobic004G267600 Sobic001G158300--Sobic002G196500 Sobic001G158300--Sobic010G237800 Sobic001G211500 Sobic001G211500 Sobic006G106200--Sobic001G211500 Sobic006G106200--Sobic008G070700 Sobic006G106200--Sobic010G222800 Sobic003G072500 Sobic003G072500 Sobic006G106200--Sobic003G072500 Sobic006G106200--Sobic003G289700 Sobic004G149400 Sobic004G149400 Sobic006G106200--Sobic004G149400 Sobic001G005800 Sobic001G005800 Sobic006G106200--Sobic001G005800 Sobic009G216500 Sobic009G216500 Sobic006G106200--Sobic009G216500 Sobic006G106200--Sobic002G112000 Sobic002G271400 Sobic002G271400 Sobic003G013800--Sobic002G271400 Sobic003G013800--Sobic010G222800 Sobic003G013800--Sobic008G070700 Sobic003G013800--Sobic003G343200 Sobic002G113400 Sobic002G113400 Sobic003G013800--Sobic002G113400 Sobic004G095200 Sobic004G095200 Sobic003G013800--Sobic004G095200 Sobic004G306100 Sobic004G306100 Sobic003G013800--Sobic004G306100 Sobic003G013800--Sobic003G289700 Sobic003G013800--Sobic002G112000 Sobic002G374200--Sobic010G212700 Sobic001G500500 Sobic001G500500 Sobic002G374200--Sobic001G500500 Sobic002G374200--Sobic010G237800 Sobic003G007200 Sobic003G007200 Sobic002G374200--Sobic003G007200 Sobic002G374200--Sobic007G153700 Sobic002G374200--Sobic005G160200 Sobic009G232500 Sobic009G232500 Sobic002G374200--Sobic009G232500 Sobic003G410200 Sobic003G410200 Sobic002G374200--Sobic003G410200 Sobic002G374200--Sobic002G196500 Sobic001G171100 Sobic001G171100 Sobic010G212700--Sobic001G171100 Sobic010G212700--Sobic001G468000 Sobic003G022900 Sobic003G022900 Sobic010G212700--Sobic003G022900 Sobic006G066400 Sobic006G066400 Sobic010G212700--Sobic006G066400 Sobic010G180200 Sobic010G180200 Sobic010G212700--Sobic010G180200 Sobic010G212700--Sobic002G196500 Sobic004G218000 Sobic004G218000 Sobic010G212700--Sobic004G218000 Sobic010G212700--Sobic002G374200 Sobic004G014100 Sobic004G014100 Sobic010G212700--Sobic004G014100 Sobic001G239100 Sobic001G239100 Sobic007G153700--Sobic001G239100 Sobic007G153700--Sobic001G468000 Sobic009G006900 Sobic009G006900 Sobic007G153700--Sobic009G006900 Sobic001G440900 Sobic001G440900 Sobic007G153700--Sobic001G440900 Sobic003G274400 Sobic003G274400 Sobic007G153700--Sobic003G274400 Sobic007G153700--Sobic010G237800 Sobic004G129600 Sobic004G129600 Sobic007G153700--Sobic004G129600 Sobic007G153700--Sobic002G374200 Sobic007G153700--Sobic002G196500 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic002G196500--Sobic001G468000 Sobic002G196500--Sobic006G272800 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200
Octagon: transcription factors


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