Gene annotation
Transcriptome id Sobic.003G013800.1
Synonym Sb03g001370
Functional annotation expressed protein
UniProt A0A1B6Q0S8
Pfam -
Panther DB PTHR21556
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0010212; response to ionizing radiation GO:0006260DNA replication GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G52950 : -
RAP-DB (Rice) LOC_Os01g12250.1 : expressed protein
MaizeGDB (Corn) Zm00025a022874
Brachypodium KQK03348
Barley HORVU3Hr1G029910.2 , HORVU3Hr1G029910.3 , HORVU3Hr1G029910.1 , HORVU3Hr1G029910.6 , HORVU3Hr1G029910.4 , HORVU3Hr1G029910.5
Wheat TraesCS3D02G155500 , TraesCS3A02G146700 , TraesCS3B02G174000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
2 Sobic.010G222800 expressed protein -
3 Sobic.008G070700 leafbladeless1, putative, expressed -
4 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
5 Sobic.002G113400 dnaJ domain containing protein, expressed -
6 Sobic.004G095200 Peptidase family C50, putative, expressed K02365: separase
7 Sobic.004G306100 expressed protein -
8 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
9 Sobic.002G112000 protein binding protein, putative, expressed -
10 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
11 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
12 Sobic.009G058100 FHA domain containing protein, putative, expressed -
13 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
14 Sobic.001G025900 expressed protein -
15 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
16 Sobic.008G131900 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@resistance protein LR10, putative, expressed -
17 Sobic.007G221700 expressed protein -
18 Sobic.006G193100 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
19 Sobic.010G243100 RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
20 Sobic.010G257500 expressed protein -


Gene co-expression network
sample Sobic003G013800 Sobic003G013800 Sobic002G271400 Sobic002G271400 Sobic003G013800--Sobic002G271400 Sobic010G222800 Sobic010G222800 Sobic003G013800--Sobic010G222800 Sobic008G070700 Sobic008G070700 Sobic003G013800--Sobic008G070700 Sobic003G343200 Sobic003G343200 Sobic003G013800--Sobic003G343200 Sobic002G113400 Sobic002G113400 Sobic003G013800--Sobic002G113400 Sobic004G095200 Sobic004G095200 Sobic003G013800--Sobic004G095200 Sobic004G306100 Sobic004G306100 Sobic003G013800--Sobic004G306100 Sobic003G289700 Sobic003G289700 Sobic003G013800--Sobic003G289700 Sobic002G112000 Sobic002G112000 Sobic003G013800--Sobic002G112000 Sobic002G271400--Sobic004G306100 Sobic002G271400--Sobic003G343200 Sobic006G127200 Sobic006G127200 Sobic002G271400--Sobic006G127200 Sobic003G411700 Sobic003G411700 Sobic002G271400--Sobic003G411700 Sobic001G025900 Sobic001G025900 Sobic002G271400--Sobic001G025900 Sobic002G271400--Sobic010G222800 Sobic002G271400--Sobic003G013800 Sobic008G004900 Sobic008G004900 Sobic002G271400--Sobic008G004900 Sobic010G024000 Sobic010G024000 Sobic002G271400--Sobic010G024000 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic010G222800--Sobic003G411700 Sobic010G222800--Sobic002G112000 Sobic010G222800--Sobic008G070700 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic008G131900 Sobic008G131900 Sobic010G222800--Sobic008G131900 Sobic006G272800 Sobic006G272800 Sobic008G070700--Sobic006G272800 Sobic008G070700--Sobic002G112000 Sobic004G267600 Sobic004G267600 Sobic008G070700--Sobic004G267600 Sobic001G439800 Sobic001G439800 Sobic008G070700--Sobic001G439800 Sobic008G070700--Sobic010G222800 Sobic010G092400 Sobic010G092400 Sobic008G070700--Sobic010G092400 Sobic002G317700 Sobic002G317700 Sobic008G070700--Sobic002G317700 Sobic001G175100 Sobic001G175100 Sobic008G070700--Sobic001G175100 Sobic003G393100 Sobic003G393100 Sobic008G070700--Sobic003G393100 Sobic003G343200--Sobic010G222800 Sobic010G257500 Sobic010G257500 Sobic003G343200--Sobic010G257500 Sobic003G343200--Sobic002G271400 Sobic001G534400 Sobic001G534400 Sobic003G343200--Sobic001G534400 Sobic003G343200--Sobic003G411700 Sobic004G014100 Sobic004G014100 Sobic003G343200--Sobic004G014100 Sobic003G343200--Sobic003G289700 Sobic003G343200--Sobic004G306100 Sobic003G343200--Sobic010G024000 Sobic004G053900 Sobic004G053900 Sobic002G113400--Sobic004G053900 Sobic002G113400--Sobic001G025900 Sobic002G297500 Sobic002G297500 Sobic002G113400--Sobic002G297500 Sobic002G290000 Sobic002G290000 Sobic002G113400--Sobic002G290000 Sobic001G013400 Sobic001G013400 Sobic002G113400--Sobic001G013400 Sobic008G148000 Sobic008G148000 Sobic002G113400--Sobic008G148000 Sobic005G110535 Sobic005G110535 Sobic002G113400--Sobic005G110535 Sobic007G125300 Sobic007G125300 Sobic002G113400--Sobic007G125300 Sobic010G051100 Sobic010G051100 Sobic002G113400--Sobic010G051100 Sobic004G321400 Sobic004G321400 Sobic004G095200--Sobic004G321400 Sobic004G095200--Sobic005G110535 Sobic004G156200 Sobic004G156200 Sobic004G095200--Sobic004G156200 Sobic004G095200--Sobic002G290000 Sobic005G068800 Sobic005G068800 Sobic004G095200--Sobic005G068800 Sobic004G095200--Sobic002G113400 Sobic003G118100 Sobic003G118100 Sobic004G095200--Sobic003G118100 Sobic009G087000 Sobic009G087000 Sobic004G095200--Sobic009G087000 Sobic003G315700 Sobic003G315700 Sobic004G095200--Sobic003G315700 Sobic004G306100--Sobic002G271400 Sobic010G103500 Sobic010G103500 Sobic004G306100--Sobic010G103500 Sobic004G306100--Sobic003G411700 Sobic004G306100--Sobic003G315700 Sobic004G306100--Sobic006G127200 Sobic003G409600 Sobic003G409600 Sobic004G306100--Sobic003G409600 Sobic002G260700 Sobic002G260700 Sobic004G306100--Sobic002G260700 Sobic002G123600 Sobic002G123600 Sobic004G306100--Sobic002G123600 Sobic010G052400 Sobic010G052400 Sobic004G306100--Sobic010G052400 Sobic005G172700 Sobic005G172700 Sobic003G289700--Sobic005G172700 Sobic003G289700--Sobic003G343200 Sobic003G289700--Sobic010G222800 Sobic010G237800 Sobic010G237800 Sobic003G289700--Sobic010G237800 Sobic003G320100 Sobic003G320100 Sobic003G289700--Sobic003G320100 Sobic006G106200 Sobic006G106200 Sobic003G289700--Sobic006G106200 Sobic009G138300 Sobic009G138300 Sobic003G289700--Sobic009G138300 Sobic010G243100 Sobic010G243100 Sobic003G289700--Sobic010G243100 Sobic005G160200 Sobic005G160200 Sobic003G289700--Sobic005G160200 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G112000--Sobic002G317700 Sobic002G112000--Sobic008G070700 Sobic002G112000--Sobic010G222800 Sobic003G129500 Sobic003G129500 Sobic002G112000--Sobic003G129500 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200
Octagon: transcription factors


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