Gene annotation
Transcriptome id Sobic.010G243100.3,Sobic.010G243100.2,Sobic.010G243100.1
Synonym ATRPA2, Sb10g028290, ATRPA32A, RPA2, RPA32A, ROR1
Functional annotation RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed
UniProt A0A194YL69 , A0A194YL58 , A0A194YL86
Pfam PF08784
Panther DB PTHR13989 PTHR13989:SF21
NCBI CDD KOG3108; Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit
KEGG Orthology K10739; RFA2, replication factor A2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24490 : replicon protein A2
RAP-DB (Rice) LOC_Os06g47830.1 : RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed
MaizeGDB (Corn) Zm00025a041824 , Zm00025a018267
Brachypodium KQK17276 , PNT75486
Barley -
Wheat TraesCS7D02G424400 , TraesCS7B02G333100 , TraesCS7A02G432800 , TraesCS7A02G432800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G138300 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
2 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
3 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
4 Sobic.001G500500 expressed protein -
5 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
6 Sobic.008G180400 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
7 Sobic.009G136000 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
8 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
9 Sobic.010G222800 expressed protein -
10 Sobic.009G012400 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
11 Sobic.003G423800 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
12 Sobic.001G137500 ankyrin, putative, expressed -
13 Sobic.004G190500 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter BoSUT1, putative, expressed K15378: solute carrier family 45, member 1/2/4
14 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.003G013800 expressed protein -
16 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
17 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
18 Sobic.003G216600 BAH domain containing protein, expressed -
19 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
20 Sobic.007G012600 - -


Gene co-expression network
sample Sobic010G243100 Sobic010G243100 Sobic009G138300 Sobic009G138300 Sobic010G243100--Sobic009G138300 Sobic010G030000 Sobic010G030000 Sobic010G243100--Sobic010G030000 Sobic010G009700 Sobic010G009700 Sobic010G243100--Sobic010G009700 Sobic001G500500 Sobic001G500500 Sobic010G243100--Sobic001G500500 Sobic003G289700 Sobic003G289700 Sobic010G243100--Sobic003G289700 Sobic008G180400 Sobic008G180400 Sobic010G243100--Sobic008G180400 Sobic009G136000 Sobic009G136000 Sobic010G243100--Sobic009G136000 Sobic001G288000 Sobic001G288000 Sobic010G243100--Sobic001G288000 Sobic010G222800 Sobic010G222800 Sobic010G243100--Sobic010G222800 Sobic009G138300--Sobic010G243100 Sobic004G328300 Sobic004G328300 Sobic009G138300--Sobic004G328300 Sobic009G138300--Sobic010G009700 Sobic009G138300--Sobic003G289700 Sobic006G236800 Sobic006G236800 Sobic009G138300--Sobic006G236800 Sobic009G138300--Sobic009G136000 Sobic003G320100 Sobic003G320100 Sobic009G138300--Sobic003G320100 Sobic001G248400 Sobic001G248400 Sobic009G138300--Sobic001G248400 Sobic009G138300--Sobic010G030000 Sobic010G038200 Sobic010G038200 Sobic010G030000--Sobic010G038200 Sobic010G030000--Sobic009G136000 Sobic008G131900 Sobic008G131900 Sobic010G030000--Sobic008G131900 Sobic010G030000--Sobic010G009700 Sobic010G030000--Sobic010G243100 Sobic005G210500 Sobic005G210500 Sobic010G030000--Sobic005G210500 Sobic003G216600 Sobic003G216600 Sobic010G030000--Sobic003G216600 Sobic001G486600 Sobic001G486600 Sobic010G030000--Sobic001G486600 Sobic010G030000--Sobic010G222800 Sobic004G298600 Sobic004G298600 Sobic010G009700--Sobic004G298600 Sobic001G131900 Sobic001G131900 Sobic010G009700--Sobic001G131900 Sobic010G009700--Sobic010G038200 Sobic006G189000 Sobic006G189000 Sobic010G009700--Sobic006G189000 Sobic005G060100 Sobic005G060100 Sobic010G009700--Sobic005G060100 Sobic009G054400 Sobic009G054400 Sobic010G009700--Sobic009G054400 Sobic002G322700 Sobic002G322700 Sobic010G009700--Sobic002G322700 Sobic002G151500 Sobic002G151500 Sobic010G009700--Sobic002G151500 Sobic007G102300 Sobic007G102300 Sobic010G009700--Sobic007G102300 Sobic001G137400 Sobic001G137400 Sobic001G500500--Sobic001G137400 Sobic001G500500--Sobic001G288000 Sobic008G098700 Sobic008G098700 Sobic001G500500--Sobic008G098700 Sobic001G500500--Sobic010G243100 Sobic001G500500--Sobic003G289700 Sobic006G215800 Sobic006G215800 Sobic001G500500--Sobic006G215800 Sobic002G374200 Sobic002G374200 Sobic001G500500--Sobic002G374200 Sobic002G299200 Sobic002G299200 Sobic001G500500--Sobic002G299200 Sobic004G313400 Sobic004G313400 Sobic001G500500--Sobic004G313400 Sobic005G172700 Sobic005G172700 Sobic003G289700--Sobic005G172700 Sobic003G343200 Sobic003G343200 Sobic003G289700--Sobic003G343200 Sobic003G289700--Sobic010G222800 Sobic010G237800 Sobic010G237800 Sobic003G289700--Sobic010G237800 Sobic003G289700--Sobic003G320100 Sobic006G106200 Sobic006G106200 Sobic003G289700--Sobic006G106200 Sobic003G289700--Sobic009G138300 Sobic003G289700--Sobic010G243100 Sobic005G160200 Sobic005G160200 Sobic003G289700--Sobic005G160200 Sobic003G423800 Sobic003G423800 Sobic008G180400--Sobic003G423800 Sobic008G180400--Sobic005G172700 Sobic008G180200 Sobic008G180200 Sobic008G180400--Sobic008G180200 Sobic003G091300 Sobic003G091300 Sobic008G180400--Sobic003G091300 Sobic001G457600 Sobic001G457600 Sobic008G180400--Sobic001G457600 Sobic002G258000 Sobic002G258000 Sobic008G180400--Sobic002G258000 Sobic008G180400--Sobic010G243100 Sobic008G180400--Sobic003G289700 Sobic002G112000 Sobic002G112000 Sobic008G180400--Sobic002G112000 Sobic009G136000--Sobic010G038200 Sobic001G082800 Sobic001G082800 Sobic009G136000--Sobic001G082800 Sobic009G125800 Sobic009G125800 Sobic009G136000--Sobic009G125800 Sobic009G136000--Sobic008G131900 Sobic009G136000--Sobic010G030000 Sobic006G193100 Sobic006G193100 Sobic009G136000--Sobic006G193100 Sobic002G390800 Sobic002G390800 Sobic009G136000--Sobic002G390800 Sobic009G131200 Sobic009G131200 Sobic009G136000--Sobic009G131200 Sobic002G052800 Sobic002G052800 Sobic009G136000--Sobic002G052800 Sobic001G288000--Sobic001G137400 Sobic001G137500 Sobic001G137500 Sobic001G288000--Sobic001G137500 Sobic001G288000--Sobic003G091300 Sobic001G288000--Sobic002G258000 Sobic007G193300 Sobic007G193300 Sobic001G288000--Sobic007G193300 Sobic001G288000--Sobic002G299200 Sobic003G006000 Sobic003G006000 Sobic001G288000--Sobic003G006000 Sobic002G178700 Sobic002G178700 Sobic001G288000--Sobic002G178700 Sobic001G419500 Sobic001G419500 Sobic001G288000--Sobic001G419500 Sobic010G222800--Sobic003G343200 Sobic010G024000 Sobic010G024000 Sobic010G222800--Sobic010G024000 Sobic003G411700 Sobic003G411700 Sobic010G222800--Sobic003G411700 Sobic010G222800--Sobic002G112000 Sobic008G070700 Sobic008G070700 Sobic010G222800--Sobic008G070700 Sobic002G271400 Sobic002G271400 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic010G222800--Sobic003G423800 Sobic010G222800--Sobic008G131900
Octagon: transcription factors


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