Gene annotation
Transcriptome id Sobic.003G091300.1
Synonym Sb03g007633
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt A0A1B6Q269
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF30
NCBI CDD -
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37870 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g03290.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G111750 - -
2 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
3 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
4 Sobic.001G137500 ankyrin, putative, expressed -
5 Sobic.003G006000 expressed protein -
6 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
7 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
8 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
9 Sobic.004G031501 - -
10 Sobic.001G137400 ankyrin, putative, expressed -
11 Sobic.008G180400 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
12 Sobic.001G457600 piwi domain containing protein, expressed -
13 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
14 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
15 Sobic.002G078900 agenet domain containing protein, expressed -
16 Sobic.008G137700 XH domain containing protein, expressed -
17 Sobic.003G088600 transcription factor X1, putative, expressed -
18 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
20 Sobic.007G012600 - -


Gene co-expression network
sample Sobic003G091300 Sobic003G091300 Sobic010G111750 Sobic010G111750 Sobic003G091300--Sobic010G111750 Sobic001G288000 Sobic001G288000 Sobic003G091300--Sobic001G288000 Sobic002G178700 Sobic002G178700 Sobic003G091300--Sobic002G178700 Sobic001G137500 Sobic001G137500 Sobic003G091300--Sobic001G137500 Sobic003G006000 Sobic003G006000 Sobic003G091300--Sobic003G006000 Sobic002G258000 Sobic002G258000 Sobic003G091300--Sobic002G258000 Sobic001G419500 Sobic001G419500 Sobic003G091300--Sobic001G419500 Sobic002G205000 Sobic002G205000 Sobic003G091300--Sobic002G205000 Sobic004G031501 Sobic004G031501 Sobic003G091300--Sobic004G031501 Sobic010G111750--Sobic003G091300 Sobic010G111750--Sobic002G178700 Sobic010G111750--Sobic003G006000 Sobic010G111750--Sobic002G258000 Sobic010G111750--Sobic001G419500 Sobic010G111750--Sobic001G137500 Sobic010G111750--Sobic004G031501 Sobic002G078900 Sobic002G078900 Sobic010G111750--Sobic002G078900 Sobic007G012600 Sobic007G012600 Sobic010G111750--Sobic007G012600 Sobic001G137400 Sobic001G137400 Sobic001G288000--Sobic001G137400 Sobic001G288000--Sobic001G137500 Sobic001G288000--Sobic003G091300 Sobic001G288000--Sobic002G258000 Sobic007G193300 Sobic007G193300 Sobic001G288000--Sobic007G193300 Sobic002G299200 Sobic002G299200 Sobic001G288000--Sobic002G299200 Sobic001G288000--Sobic003G006000 Sobic001G288000--Sobic002G178700 Sobic001G288000--Sobic001G419500 Sobic002G178700--Sobic001G419500 Sobic002G178700--Sobic003G006000 Sobic002G178700--Sobic001G137500 Sobic003G088600 Sobic003G088600 Sobic002G178700--Sobic003G088600 Sobic009G063700 Sobic009G063700 Sobic002G178700--Sobic009G063700 Sobic002G178700--Sobic002G078900 Sobic001G459400 Sobic001G459400 Sobic002G178700--Sobic001G459400 Sobic008G137700 Sobic008G137700 Sobic002G178700--Sobic008G137700 Sobic003G300000 Sobic003G300000 Sobic002G178700--Sobic003G300000 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G457600 Sobic001G457600 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137500--Sobic001G137400 Sobic010G194600 Sobic010G194600 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600 Sobic003G006000--Sobic002G178700 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic006G271600 Sobic006G271600 Sobic003G006000--Sobic006G271600 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic009G243000 Sobic009G243000 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic003G006000--Sobic001G457600 Sobic002G258000--Sobic001G137500 Sobic002G258000--Sobic001G457600 Sobic002G258000--Sobic001G419500 Sobic002G258000--Sobic001G137400 Sobic002G258000--Sobic003G006000 Sobic002G258000--Sobic009G243000 Sobic002G258000--Sobic007G193300 Sobic002G258000--Sobic010G194600 Sobic002G258000--Sobic002G178700 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic009G075500 Sobic009G075500 Sobic001G419500--Sobic009G075500 Sobic002G205000--Sobic009G243000 Sobic007G033700 Sobic007G033700 Sobic002G205000--Sobic007G033700 Sobic002G205000--Sobic002G078900 Sobic004G237000 Sobic004G237000 Sobic002G205000--Sobic004G237000 Sobic003G091700 Sobic003G091700 Sobic002G205000--Sobic003G091700 Sobic003G319900 Sobic003G319900 Sobic002G205000--Sobic003G319900 Sobic001G137600 Sobic001G137600 Sobic002G205000--Sobic001G137600 Sobic002G205000--Sobic003G006000 Sobic005G131000 Sobic005G131000 Sobic002G205000--Sobic005G131000 Sobic004G031501--Sobic010G111750 Sobic004G031501--Sobic003G091300 Sobic004G031501--Sobic002G178700 Sobic004G031501--Sobic003G006000 Sobic004G031501--Sobic001G137500 Sobic008G188800 Sobic008G188800 Sobic004G031501--Sobic008G188800 Sobic004G031501--Sobic001G288000 Sobic004G031501--Sobic002G258000 Sobic004G031501--Sobic007G012600
Octagon: transcription factors


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