Gene annotation
Transcriptome id Sobic.007G012600.2
Synonym
Functional annotation -
UniProt A0A1B6PF37
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G152700 - -
2 Sobic.001G171001 - -
3 Sobic.010G111750 - -
4 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
6 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
7 Sobic.001G137500 ankyrin, putative, expressed -
8 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
9 Sobic.010G243100 RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
10 Sobic.003G088600 transcription factor X1, putative, expressed -
11 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
12 Sobic.003G072700 expressed protein -
13 Sobic.009G138300 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
14 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
15 Sobic.003G006000 expressed protein -
16 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
17 Sobic.004G031501 - -
18 Sobic.008G188800 ankyrin repeat domain-containing protein, putative, expressed -
19 Sobic.001G137400 ankyrin, putative, expressed -
20 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -


Gene co-expression network
sample Sobic007G012600 Sobic007G012600 Sobic006G152700 Sobic006G152700 Sobic007G012600--Sobic006G152700 Sobic001G171001 Sobic001G171001 Sobic007G012600--Sobic001G171001 Sobic010G111750 Sobic010G111750 Sobic007G012600--Sobic010G111750 Sobic002G258000 Sobic002G258000 Sobic007G012600--Sobic002G258000 Sobic003G396500 Sobic003G396500 Sobic007G012600--Sobic003G396500 Sobic001G288000 Sobic001G288000 Sobic007G012600--Sobic001G288000 Sobic001G137500 Sobic001G137500 Sobic007G012600--Sobic001G137500 Sobic003G091300 Sobic003G091300 Sobic007G012600--Sobic003G091300 Sobic010G243100 Sobic010G243100 Sobic007G012600--Sobic010G243100 Sobic006G152700--Sobic007G012600 Sobic003G072700 Sobic003G072700 Sobic006G152700--Sobic003G072700 Sobic006G152700--Sobic003G396500 Sobic003G377300 Sobic003G377300 Sobic006G152700--Sobic003G377300 Sobic008G188800 Sobic008G188800 Sobic006G152700--Sobic008G188800 Sobic008G140600 Sobic008G140600 Sobic006G152700--Sobic008G140600 Sobic009G142500 Sobic009G142500 Sobic006G152700--Sobic009G142500 Sobic007G146200 Sobic007G146200 Sobic006G152700--Sobic007G146200 Sobic003G258100 Sobic003G258100 Sobic006G152700--Sobic003G258100 Sobic001G171001--Sobic003G396500 Sobic001G171001--Sobic007G012600 Sobic001G171001--Sobic006G152700 Sobic003G325600 Sobic003G325600 Sobic001G171001--Sobic003G325600 Sobic002G299200 Sobic002G299200 Sobic001G171001--Sobic002G299200 Sobic001G171001--Sobic001G288000 Sobic010G030000 Sobic010G030000 Sobic001G171001--Sobic010G030000 Sobic009G136000 Sobic009G136000 Sobic001G171001--Sobic009G136000 Sobic004G302100 Sobic004G302100 Sobic001G171001--Sobic004G302100 Sobic010G111750--Sobic003G091300 Sobic002G178700 Sobic002G178700 Sobic010G111750--Sobic002G178700 Sobic003G006000 Sobic003G006000 Sobic010G111750--Sobic003G006000 Sobic010G111750--Sobic002G258000 Sobic001G419500 Sobic001G419500 Sobic010G111750--Sobic001G419500 Sobic010G111750--Sobic001G137500 Sobic004G031501 Sobic004G031501 Sobic010G111750--Sobic004G031501 Sobic002G078900 Sobic002G078900 Sobic010G111750--Sobic002G078900 Sobic010G111750--Sobic007G012600 Sobic002G258000--Sobic001G137500 Sobic001G457600 Sobic001G457600 Sobic002G258000--Sobic001G457600 Sobic002G258000--Sobic001G419500 Sobic001G137400 Sobic001G137400 Sobic002G258000--Sobic001G137400 Sobic002G258000--Sobic003G006000 Sobic009G243000 Sobic009G243000 Sobic002G258000--Sobic009G243000 Sobic007G193300 Sobic007G193300 Sobic002G258000--Sobic007G193300 Sobic010G194600 Sobic010G194600 Sobic002G258000--Sobic010G194600 Sobic002G258000--Sobic002G178700 Sobic001G218600 Sobic001G218600 Sobic003G396500--Sobic001G218600 Sobic003G396500--Sobic003G325600 Sobic003G090000 Sobic003G090000 Sobic003G396500--Sobic003G090000 Sobic003G396500--Sobic002G299200 Sobic003G027000 Sobic003G027000 Sobic003G396500--Sobic003G027000 Sobic006G215800 Sobic006G215800 Sobic003G396500--Sobic006G215800 Sobic003G396500--Sobic006G152700 Sobic005G070301 Sobic005G070301 Sobic003G396500--Sobic005G070301 Sobic004G313400 Sobic004G313400 Sobic003G396500--Sobic004G313400 Sobic001G288000--Sobic001G137400 Sobic001G288000--Sobic001G137500 Sobic001G288000--Sobic003G091300 Sobic001G288000--Sobic002G258000 Sobic001G288000--Sobic007G193300 Sobic001G288000--Sobic002G299200 Sobic001G288000--Sobic003G006000 Sobic001G288000--Sobic002G178700 Sobic001G288000--Sobic001G419500 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic003G088600 Sobic003G088600 Sobic001G137500--Sobic003G088600 Sobic003G091300--Sobic010G111750 Sobic003G091300--Sobic001G288000 Sobic003G091300--Sobic002G178700 Sobic003G091300--Sobic001G137500 Sobic003G091300--Sobic003G006000 Sobic003G091300--Sobic002G258000 Sobic003G091300--Sobic001G419500 Sobic002G205000 Sobic002G205000 Sobic003G091300--Sobic002G205000 Sobic003G091300--Sobic004G031501 Sobic009G138300 Sobic009G138300 Sobic010G243100--Sobic009G138300 Sobic010G243100--Sobic010G030000 Sobic010G009700 Sobic010G009700 Sobic010G243100--Sobic010G009700 Sobic001G500500 Sobic001G500500 Sobic010G243100--Sobic001G500500 Sobic003G289700 Sobic003G289700 Sobic010G243100--Sobic003G289700 Sobic008G180400 Sobic008G180400 Sobic010G243100--Sobic008G180400 Sobic010G243100--Sobic009G136000 Sobic010G243100--Sobic001G288000 Sobic010G222800 Sobic010G222800 Sobic010G243100--Sobic010G222800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.