Gene annotation
Transcriptome id Sobic.004G313400.1
Synonym GTA2, GTA02
Functional annotation transcription elongation factor SPT5 homolog 1, putative, expressed
UniProt A0A1Z5RPZ3
Pfam PF11942 PF00467 PF03439
Panther DB PTHR11125
NCBI CDD -
KEGG Orthology K15172; SUPT5H, transcription elongation factor SPT5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G08350 : global transcription factor group A2
RAP-DB (Rice) LOC_Os02g53230.1 : transcription elongation factor SPT5 homolog 1, putative, expressed
MaizeGDB (Corn) Zm00025a049607
Brachypodium PNT69552 , KQK19065 , PNT69553 , PNT69554
Barley HORVU7Hr1G035280.7 , HORVU7Hr1G035280.6 , HORVU7Hr1G035280.5 , HORVU7Hr1G035280.4 , HORVU7Hr1G035280.3 , HORVU7Hr1G035280.2 , HORVU7Hr1G035280.1 , HORVU7Hr1G035280.9 , HORVU7Hr1G035280.8 , HORVU7Hr1G035280.17 , HORVU7Hr1G035280.16 , HORVU7Hr1G035280.15 , HORVU7Hr1G035280.14 , HORVU7Hr1G035280.13 , HORVU7Hr1G035280.12 , HORVU7Hr1G035280.11
Wheat TraesCS6A02G325100 , TraesCS6A02G325100 , TraesCS7A02G168300 , TraesCS7A02G168300 , TraesCS7B02G073100 , TraesCS7D02G169200 , TraesCS6B02G355400 , TraesCS6D02G304800 , TraesCS6D02G304800
Populus -


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cDNA sequences
Sobic.004G313400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
2 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
3 Sobic.001G218600 MATH domain containing protein, expressed -
4 Sobic.005G070301 - K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
5 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
6 Sobic.002G151500 R-interacting factor 1, putative, expressed -
7 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
8 Sobic.009G066600 expressed protein -
9 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
10 Sobic.001G132200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
12 Sobic.003G258100 dynamin family protein, putative, expressed -
13 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
14 Sobic.006G152700 - -
15 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
16 Sobic.009G084800 - -
17 Sobic.007G060100 expressed protein -
18 Sobic.010G263400 expressed protein -
19 Sobic.008G070600 leafbladeless1, putative, expressed -
20 Sobic.004G038400 fruit bromelain precursor, putative, expressed -


Gene co-expression network
sample Sobic004G313400 Sobic004G313400 Sobic003G090000 Sobic003G090000 Sobic004G313400--Sobic003G090000 Sobic003G027000 Sobic003G027000 Sobic004G313400--Sobic003G027000 Sobic001G218600 Sobic001G218600 Sobic004G313400--Sobic001G218600 Sobic005G070301 Sobic005G070301 Sobic004G313400--Sobic005G070301 Sobic006G215800 Sobic006G215800 Sobic004G313400--Sobic006G215800 Sobic002G151500 Sobic002G151500 Sobic004G313400--Sobic002G151500 Sobic003G396500 Sobic003G396500 Sobic004G313400--Sobic003G396500 Sobic009G066600 Sobic009G066600 Sobic004G313400--Sobic009G066600 Sobic003G044000 Sobic003G044000 Sobic004G313400--Sobic003G044000 Sobic003G090000--Sobic003G027000 Sobic003G090000--Sobic001G218600 Sobic002G299200 Sobic002G299200 Sobic003G090000--Sobic002G299200 Sobic003G090000--Sobic006G215800 Sobic003G090000--Sobic003G396500 Sobic003G090000--Sobic004G313400 Sobic003G090000--Sobic003G044000 Sobic003G090000--Sobic005G070301 Sobic010G157200 Sobic010G157200 Sobic003G090000--Sobic010G157200 Sobic003G027000--Sobic003G090000 Sobic003G027000--Sobic001G218600 Sobic003G027000--Sobic002G299200 Sobic003G027000--Sobic005G070301 Sobic003G027000--Sobic004G313400 Sobic003G027000--Sobic003G396500 Sobic003G027000--Sobic006G215800 Sobic003G027000--Sobic003G044000 Sobic009G152120 Sobic009G152120 Sobic003G027000--Sobic009G152120 Sobic001G218600--Sobic003G090000 Sobic001G218600--Sobic003G027000 Sobic001G218600--Sobic003G396500 Sobic001G218600--Sobic005G070301 Sobic001G506400 Sobic001G506400 Sobic001G218600--Sobic001G506400 Sobic001G218600--Sobic003G044000 Sobic007G060100 Sobic007G060100 Sobic001G218600--Sobic007G060100 Sobic001G218600--Sobic010G157200 Sobic010G263400 Sobic010G263400 Sobic001G218600--Sobic010G263400 Sobic005G070301--Sobic001G218600 Sobic005G070301--Sobic003G027000 Sobic005G070301--Sobic004G313400 Sobic007G144100 Sobic007G144100 Sobic005G070301--Sobic007G144100 Sobic005G070301--Sobic003G090000 Sobic005G171900 Sobic005G171900 Sobic005G070301--Sobic005G171900 Sobic003G258100 Sobic003G258100 Sobic005G070301--Sobic003G258100 Sobic003G001901 Sobic003G001901 Sobic005G070301--Sobic003G001901 Sobic005G070301--Sobic003G396500 Sobic006G215800--Sobic003G090000 Sobic006G215800--Sobic003G027000 Sobic006G215800--Sobic001G218600 Sobic006G215800--Sobic004G313400 Sobic006G215800--Sobic003G396500 Sobic006G215800--Sobic002G299200 Sobic008G098700 Sobic008G098700 Sobic006G215800--Sobic008G098700 Sobic006G215800--Sobic007G060100 Sobic006G215800--Sobic005G070301 Sobic001G131900 Sobic001G131900 Sobic002G151500--Sobic001G131900 Sobic002G151500--Sobic004G313400 Sobic010G009700 Sobic010G009700 Sobic002G151500--Sobic010G009700 Sobic003G377300 Sobic003G377300 Sobic002G151500--Sobic003G377300 Sobic003G352900 Sobic003G352900 Sobic002G151500--Sobic003G352900 Sobic002G151500--Sobic007G144100 Sobic002G151500--Sobic003G258100 Sobic005G045800 Sobic005G045800 Sobic002G151500--Sobic005G045800 Sobic004G298600 Sobic004G298600 Sobic002G151500--Sobic004G298600 Sobic003G396500--Sobic001G218600 Sobic003G325600 Sobic003G325600 Sobic003G396500--Sobic003G325600 Sobic003G396500--Sobic003G090000 Sobic003G396500--Sobic002G299200 Sobic003G396500--Sobic003G027000 Sobic003G396500--Sobic006G215800 Sobic006G152700 Sobic006G152700 Sobic003G396500--Sobic006G152700 Sobic003G396500--Sobic005G070301 Sobic003G396500--Sobic004G313400 Sobic009G066600--Sobic001G131900 Sobic009G066600--Sobic004G313400 Sobic009G066600--Sobic003G044000 Sobic006G189000 Sobic006G189000 Sobic009G066600--Sobic006G189000 Sobic009G066600--Sobic005G045800 Sobic009G066600--Sobic002G151500 Sobic009G066600--Sobic003G352900 Sobic004G038400 Sobic004G038400 Sobic009G066600--Sobic004G038400 Sobic009G066600--Sobic007G144100 Sobic003G044000--Sobic001G218600 Sobic003G044000--Sobic003G090000 Sobic003G044000--Sobic003G027000 Sobic003G044000--Sobic001G506400 Sobic003G044000--Sobic001G131900 Sobic003G044000--Sobic003G396500 Sobic003G044000--Sobic009G066600 Sobic003G044000--Sobic004G313400 Sobic003G293400 Sobic003G293400 Sobic003G044000--Sobic003G293400
Octagon: transcription factors


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