Gene annotation
Transcriptome id Sobic.003G090000.1
Synonym Sb03g007552
Functional annotation seven in absentia protein family protein, putative, expressed
UniProt A0A1B6Q262
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF40
NCBI CDD -
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G62800 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g55640.1 : seven in absentia protein family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
2 Sobic.001G218600 MATH domain containing protein, expressed -
3 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
4 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
5 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
6 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
7 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
8 Sobic.005G070301 - K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
9 Sobic.010G157200 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
10 Sobic.009G152120 - -
11 Sobic.007G060100 expressed protein -
12 Sobic.001G506400 expressed protein -
13 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
14 Sobic.008G098700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat containing protein, expressed -
15 Sobic.010G263400 expressed protein -
16 Sobic.001G132200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
17 Sobic.007G048900 OsFBX381 - F-box domain containing protein, expressed -
18 Sobic.003G258100 dynamin family protein, putative, expressed -
19 Sobic.009G066600 expressed protein -
20 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase


Gene co-expression network
sample Sobic003G090000 Sobic003G090000 Sobic003G027000 Sobic003G027000 Sobic003G090000--Sobic003G027000 Sobic001G218600 Sobic001G218600 Sobic003G090000--Sobic001G218600 Sobic002G299200 Sobic002G299200 Sobic003G090000--Sobic002G299200 Sobic006G215800 Sobic006G215800 Sobic003G090000--Sobic006G215800 Sobic003G396500 Sobic003G396500 Sobic003G090000--Sobic003G396500 Sobic004G313400 Sobic004G313400 Sobic003G090000--Sobic004G313400 Sobic003G044000 Sobic003G044000 Sobic003G090000--Sobic003G044000 Sobic005G070301 Sobic005G070301 Sobic003G090000--Sobic005G070301 Sobic010G157200 Sobic010G157200 Sobic003G090000--Sobic010G157200 Sobic003G027000--Sobic003G090000 Sobic003G027000--Sobic001G218600 Sobic003G027000--Sobic002G299200 Sobic003G027000--Sobic005G070301 Sobic003G027000--Sobic004G313400 Sobic003G027000--Sobic003G396500 Sobic003G027000--Sobic006G215800 Sobic003G027000--Sobic003G044000 Sobic009G152120 Sobic009G152120 Sobic003G027000--Sobic009G152120 Sobic001G218600--Sobic003G090000 Sobic001G218600--Sobic003G027000 Sobic001G218600--Sobic003G396500 Sobic001G218600--Sobic005G070301 Sobic001G506400 Sobic001G506400 Sobic001G218600--Sobic001G506400 Sobic001G218600--Sobic003G044000 Sobic007G060100 Sobic007G060100 Sobic001G218600--Sobic007G060100 Sobic001G218600--Sobic010G157200 Sobic010G263400 Sobic010G263400 Sobic001G218600--Sobic010G263400 Sobic002G299200--Sobic003G027000 Sobic002G299200--Sobic003G090000 Sobic002G299200--Sobic003G396500 Sobic002G299200--Sobic009G152120 Sobic002G299200--Sobic001G218600 Sobic002G299200--Sobic006G215800 Sobic002G259301 Sobic002G259301 Sobic002G299200--Sobic002G259301 Sobic001G288000 Sobic001G288000 Sobic002G299200--Sobic001G288000 Sobic002G299200--Sobic005G070301 Sobic006G215800--Sobic003G090000 Sobic006G215800--Sobic003G027000 Sobic006G215800--Sobic001G218600 Sobic006G215800--Sobic004G313400 Sobic006G215800--Sobic003G396500 Sobic006G215800--Sobic002G299200 Sobic008G098700 Sobic008G098700 Sobic006G215800--Sobic008G098700 Sobic006G215800--Sobic007G060100 Sobic006G215800--Sobic005G070301 Sobic003G396500--Sobic001G218600 Sobic003G325600 Sobic003G325600 Sobic003G396500--Sobic003G325600 Sobic003G396500--Sobic003G090000 Sobic003G396500--Sobic002G299200 Sobic003G396500--Sobic003G027000 Sobic003G396500--Sobic006G215800 Sobic006G152700 Sobic006G152700 Sobic003G396500--Sobic006G152700 Sobic003G396500--Sobic005G070301 Sobic003G396500--Sobic004G313400 Sobic004G313400--Sobic003G090000 Sobic004G313400--Sobic003G027000 Sobic004G313400--Sobic001G218600 Sobic004G313400--Sobic005G070301 Sobic004G313400--Sobic006G215800 Sobic002G151500 Sobic002G151500 Sobic004G313400--Sobic002G151500 Sobic004G313400--Sobic003G396500 Sobic009G066600 Sobic009G066600 Sobic004G313400--Sobic009G066600 Sobic004G313400--Sobic003G044000 Sobic003G044000--Sobic001G218600 Sobic003G044000--Sobic003G090000 Sobic003G044000--Sobic003G027000 Sobic003G044000--Sobic001G506400 Sobic001G131900 Sobic001G131900 Sobic003G044000--Sobic001G131900 Sobic003G044000--Sobic003G396500 Sobic003G044000--Sobic009G066600 Sobic003G044000--Sobic004G313400 Sobic003G293400 Sobic003G293400 Sobic003G044000--Sobic003G293400 Sobic005G070301--Sobic001G218600 Sobic005G070301--Sobic003G027000 Sobic005G070301--Sobic004G313400 Sobic007G144100 Sobic007G144100 Sobic005G070301--Sobic007G144100 Sobic005G070301--Sobic003G090000 Sobic005G171900 Sobic005G171900 Sobic005G070301--Sobic005G171900 Sobic003G258100 Sobic003G258100 Sobic005G070301--Sobic003G258100 Sobic003G001901 Sobic003G001901 Sobic005G070301--Sobic003G001901 Sobic005G070301--Sobic003G396500 Sobic010G157200--Sobic001G218600 Sobic010G157200--Sobic010G263400 Sobic009G168150 Sobic009G168150 Sobic010G157200--Sobic009G168150 Sobic010G157200--Sobic007G060100 Sobic010G157200--Sobic001G506400 Sobic010G157200--Sobic007G144100 Sobic004G038400 Sobic004G038400 Sobic010G157200--Sobic004G038400 Sobic010G157200--Sobic003G258100 Sobic010G058300 Sobic010G058300 Sobic010G157200--Sobic010G058300
Octagon: transcription factors


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