Gene annotation
Transcriptome id Sobic.008G098700.1
Synonym PUM12, Sb08g015000, APUM12
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pumilio-family RNA binding repeat containing protein, expressed
UniProt C5YNS3
Pfam PF00806
Panther DB PTHR12537 PTHR12537:SF69
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G56510 : pumilio 12
RAP-DB (Rice) LOC_Os12g30520.1 : pumilio-family RNA binding repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a054110
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
2 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
3 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
4 Sobic.009G152120 - -
5 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
6 Sobic.001G500500 expressed protein -
7 Sobic.010G090700 expressed protein -
8 Sobic.002G106200 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
9 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
10 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
11 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
12 Sobic.001G218600 MATH domain containing protein, expressed -
13 Sobic.009G066600 expressed protein -
14 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
15 Sobic.006G181500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
16 Sobic.009G152140 - -
17 Sobic.007G060100 expressed protein -
18 Sobic.008G180400 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
19 Sobic.002G151500 R-interacting factor 1, putative, expressed -
20 Sobic.001G137400 ankyrin, putative, expressed -


Gene co-expression network
sample Sobic008G098700 Sobic008G098700 Sobic006G215800 Sobic006G215800 Sobic008G098700--Sobic006G215800 Sobic002G299200 Sobic002G299200 Sobic008G098700--Sobic002G299200 Sobic003G090000 Sobic003G090000 Sobic008G098700--Sobic003G090000 Sobic009G152120 Sobic009G152120 Sobic008G098700--Sobic009G152120 Sobic003G027000 Sobic003G027000 Sobic008G098700--Sobic003G027000 Sobic001G500500 Sobic001G500500 Sobic008G098700--Sobic001G500500 Sobic010G090700 Sobic010G090700 Sobic008G098700--Sobic010G090700 Sobic002G106200 Sobic002G106200 Sobic008G098700--Sobic002G106200 Sobic003G396500 Sobic003G396500 Sobic008G098700--Sobic003G396500 Sobic006G215800--Sobic003G090000 Sobic006G215800--Sobic003G027000 Sobic001G218600 Sobic001G218600 Sobic006G215800--Sobic001G218600 Sobic004G313400 Sobic004G313400 Sobic006G215800--Sobic004G313400 Sobic006G215800--Sobic003G396500 Sobic006G215800--Sobic002G299200 Sobic006G215800--Sobic008G098700 Sobic007G060100 Sobic007G060100 Sobic006G215800--Sobic007G060100 Sobic005G070301 Sobic005G070301 Sobic006G215800--Sobic005G070301 Sobic002G299200--Sobic003G027000 Sobic002G299200--Sobic003G090000 Sobic002G299200--Sobic003G396500 Sobic002G299200--Sobic009G152120 Sobic002G299200--Sobic001G218600 Sobic002G299200--Sobic006G215800 Sobic002G259301 Sobic002G259301 Sobic002G299200--Sobic002G259301 Sobic001G288000 Sobic001G288000 Sobic002G299200--Sobic001G288000 Sobic002G299200--Sobic005G070301 Sobic003G090000--Sobic003G027000 Sobic003G090000--Sobic001G218600 Sobic003G090000--Sobic002G299200 Sobic003G090000--Sobic006G215800 Sobic003G090000--Sobic003G396500 Sobic003G090000--Sobic004G313400 Sobic003G044000 Sobic003G044000 Sobic003G090000--Sobic003G044000 Sobic003G090000--Sobic005G070301 Sobic010G157200 Sobic010G157200 Sobic003G090000--Sobic010G157200 Sobic009G152120--Sobic002G299200 Sobic009G152120--Sobic003G027000 Sobic009G152120--Sobic003G090000 Sobic009G152120--Sobic001G218600 Sobic009G152120--Sobic008G098700 Sobic009G152120--Sobic003G044000 Sobic009G152120--Sobic003G396500 Sobic009G152120--Sobic006G215800 Sobic009G152120--Sobic010G157200 Sobic003G027000--Sobic003G090000 Sobic003G027000--Sobic001G218600 Sobic003G027000--Sobic002G299200 Sobic003G027000--Sobic005G070301 Sobic003G027000--Sobic004G313400 Sobic003G027000--Sobic003G396500 Sobic003G027000--Sobic006G215800 Sobic003G027000--Sobic003G044000 Sobic003G027000--Sobic009G152120 Sobic001G137400 Sobic001G137400 Sobic001G500500--Sobic001G137400 Sobic001G500500--Sobic001G288000 Sobic001G500500--Sobic008G098700 Sobic010G243100 Sobic010G243100 Sobic001G500500--Sobic010G243100 Sobic003G289700 Sobic003G289700 Sobic001G500500--Sobic003G289700 Sobic001G500500--Sobic006G215800 Sobic002G374200 Sobic002G374200 Sobic001G500500--Sobic002G374200 Sobic001G500500--Sobic002G299200 Sobic001G500500--Sobic004G313400 Sobic004G346750 Sobic004G346750 Sobic010G090700--Sobic004G346750 Sobic010G090700--Sobic008G098700 Sobic006G181500 Sobic006G181500 Sobic010G090700--Sobic006G181500 Sobic010G090700--Sobic006G215800 Sobic007G048900 Sobic007G048900 Sobic010G090700--Sobic007G048900 Sobic010G090700--Sobic002G299200 Sobic003G270100 Sobic003G270100 Sobic010G090700--Sobic003G270100 Sobic010G090700--Sobic002G106200 Sobic010G090700--Sobic003G044000 Sobic002G106200--Sobic007G048900 Sobic002G106200--Sobic006G215800 Sobic003G342500 Sobic003G342500 Sobic002G106200--Sobic003G342500 Sobic002G106200--Sobic007G060100 Sobic001G152700 Sobic001G152700 Sobic002G106200--Sobic001G152700 Sobic002G106200--Sobic006G181500 Sobic002G108100 Sobic002G108100 Sobic002G106200--Sobic002G108100 Sobic010G160300 Sobic010G160300 Sobic002G106200--Sobic010G160300 Sobic002G057400 Sobic002G057400 Sobic002G106200--Sobic002G057400 Sobic003G396500--Sobic001G218600 Sobic003G325600 Sobic003G325600 Sobic003G396500--Sobic003G325600 Sobic003G396500--Sobic003G090000 Sobic003G396500--Sobic002G299200 Sobic003G396500--Sobic003G027000 Sobic003G396500--Sobic006G215800 Sobic006G152700 Sobic006G152700 Sobic003G396500--Sobic006G152700 Sobic003G396500--Sobic005G070301 Sobic003G396500--Sobic004G313400
Octagon: transcription factors


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