Gene annotation
Transcriptome id Sobic.003G027000.1
Synonym AG, Sb03g002525
Functional annotation OsMADS3 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5XL84
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF170
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G18960 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os01g10504.1 : OsMADS3 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a025641 , Zm00025a021527 , Zm00025a032331 , Zm00025a043140 , Zm00025a005260 , Zm00025a005261 , Zm00025a008189 , Zm00025a054447 , Zm00025a016785 , Zm00025a022983 , Zm00025a035864
Brachypodium PNT65319 , KQK15335 , KQK15334 , KQK15336 , KQK03211 , KQK03210 , KQK03213 , KQK03212 , KQK00790 , KQJ99121 , KQJ91889 , KQK22883 , PNT65320 , PNT65321
Barley HORVU1Hr1G029220.8 , HORVU1Hr1G029220.9 , HORVU1Hr1G029220.2 , HORVU1Hr1G029220.3 , HORVU1Hr1G029220.1 , HORVU1Hr1G029220.6 , HORVU1Hr1G029220.7 , HORVU1Hr1G029220.5 , HORVU3Hr1G026650.1 , HORVU3Hr1G026650.2 , HORVU3Hr1G026650.3 , HORVU3Hr1G026650.4 , HORVU3Hr1G026650.5 , HORVU3Hr1G026650.6 , HORVU3Hr1G026650.7 , HORVU3Hr1G026650.8 , HORVU3Hr1G026650.9 , HORVU1Hr1G029220.10 , HORVU1Hr1G029220.11 , HORVU1Hr1G029220.12 , HORVU1Hr1G029220.13 , HORVU7Hr1G076310.14 , HORVU7Hr1G076310.15 , HORVU6Hr1G066140.9 , HORVU6Hr1G066140.8 , HORVU6Hr1G066140.1 , HORVU6Hr1G066140.3 , HORVU6Hr1G066140.2 , HORVU6Hr1G066140.5 , HORVU6Hr1G066140.4 , HORVU6Hr1G066140.7 , HORVU6Hr1G066140.6 , HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8 , HORVU3Hr1G026650.12 , HORVU3Hr1G026650.13 , HORVU3Hr1G026650.10 , HORVU3Hr1G026650.11 , HORVU3Hr1G026650.14 , HORVU3Hr1G026650.15 , HORVU7Hr1G076310.4 , HORVU7Hr1G076310.5 , HORVU7Hr1G076310.6 , HORVU7Hr1G076310.7 , HORVU7Hr1G076310.1 , HORVU7Hr1G076310.2 , HORVU7Hr1G076310.3
Wheat TraesCS5A02G117500 , TraesCS5A02G117500 , TraesCS7D02G261600 , TraesCS7B02G020800 , TraesCS7A02G319400 , TraesCS7A02G319400 , TraesCS7D02G120500 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS3D02G140200 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS3A02G314300 , TraesCS3A02G314300 , TraesCS3A02G314300 , TraesCS7D02G315900 , TraesCS7D02G315900 , TraesCS7D02G315900 , TraesCS7B02G220200 , TraesCS7B02G220200 , TraesCS5D02G118200 , TraesCS5D02G118200 , TraesCS1D02G127700 , TraesCS1D02G127700 , TraesCS1B02G144800 , TraesCS1B02G144800 , TraesCS2B02G200800 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS3B02G157500 , TraesCS7A02G122000 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS7D02G261600 , TraesCS5B02G115100 , TraesCS5B02G115100 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS1A02G125800 , TraesCS1A02G125800
Populus -


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cDNA sequences
Sobic.003G027000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
2 Sobic.001G218600 MATH domain containing protein, expressed -
3 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
4 Sobic.005G070301 - K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
5 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
6 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
7 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
8 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
9 Sobic.009G152120 - -
10 Sobic.010G157200 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
11 Sobic.003G258100 dynamin family protein, putative, expressed -
12 Sobic.007G060100 expressed protein -
13 Sobic.008G098700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat containing protein, expressed -
14 Sobic.005G171900 expressed protein -
15 Sobic.001G506400 expressed protein -
16 Sobic.010G263400 expressed protein -
17 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
18 Sobic.002G151500 R-interacting factor 1, putative, expressed -
19 Sobic.005G212100 powdery mildew resistance protein PM3b, putative, expressed -
20 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C


Gene co-expression network
sample Sobic003G027000 Sobic003G027000 Sobic003G090000 Sobic003G090000 Sobic003G027000--Sobic003G090000 Sobic001G218600 Sobic001G218600 Sobic003G027000--Sobic001G218600 Sobic002G299200 Sobic002G299200 Sobic003G027000--Sobic002G299200 Sobic005G070301 Sobic005G070301 Sobic003G027000--Sobic005G070301 Sobic004G313400 Sobic004G313400 Sobic003G027000--Sobic004G313400 Sobic003G396500 Sobic003G396500 Sobic003G027000--Sobic003G396500 Sobic006G215800 Sobic006G215800 Sobic003G027000--Sobic006G215800 Sobic003G044000 Sobic003G044000 Sobic003G027000--Sobic003G044000 Sobic009G152120 Sobic009G152120 Sobic003G027000--Sobic009G152120 Sobic003G090000--Sobic003G027000 Sobic003G090000--Sobic001G218600 Sobic003G090000--Sobic002G299200 Sobic003G090000--Sobic006G215800 Sobic003G090000--Sobic003G396500 Sobic003G090000--Sobic004G313400 Sobic003G090000--Sobic003G044000 Sobic003G090000--Sobic005G070301 Sobic010G157200 Sobic010G157200 Sobic003G090000--Sobic010G157200 Sobic001G218600--Sobic003G090000 Sobic001G218600--Sobic003G027000 Sobic001G218600--Sobic003G396500 Sobic001G218600--Sobic005G070301 Sobic001G506400 Sobic001G506400 Sobic001G218600--Sobic001G506400 Sobic001G218600--Sobic003G044000 Sobic007G060100 Sobic007G060100 Sobic001G218600--Sobic007G060100 Sobic001G218600--Sobic010G157200 Sobic010G263400 Sobic010G263400 Sobic001G218600--Sobic010G263400 Sobic002G299200--Sobic003G027000 Sobic002G299200--Sobic003G090000 Sobic002G299200--Sobic003G396500 Sobic002G299200--Sobic009G152120 Sobic002G299200--Sobic001G218600 Sobic002G299200--Sobic006G215800 Sobic002G259301 Sobic002G259301 Sobic002G299200--Sobic002G259301 Sobic001G288000 Sobic001G288000 Sobic002G299200--Sobic001G288000 Sobic002G299200--Sobic005G070301 Sobic005G070301--Sobic001G218600 Sobic005G070301--Sobic003G027000 Sobic005G070301--Sobic004G313400 Sobic007G144100 Sobic007G144100 Sobic005G070301--Sobic007G144100 Sobic005G070301--Sobic003G090000 Sobic005G171900 Sobic005G171900 Sobic005G070301--Sobic005G171900 Sobic003G258100 Sobic003G258100 Sobic005G070301--Sobic003G258100 Sobic003G001901 Sobic003G001901 Sobic005G070301--Sobic003G001901 Sobic005G070301--Sobic003G396500 Sobic004G313400--Sobic003G090000 Sobic004G313400--Sobic003G027000 Sobic004G313400--Sobic001G218600 Sobic004G313400--Sobic005G070301 Sobic004G313400--Sobic006G215800 Sobic002G151500 Sobic002G151500 Sobic004G313400--Sobic002G151500 Sobic004G313400--Sobic003G396500 Sobic009G066600 Sobic009G066600 Sobic004G313400--Sobic009G066600 Sobic004G313400--Sobic003G044000 Sobic003G396500--Sobic001G218600 Sobic003G325600 Sobic003G325600 Sobic003G396500--Sobic003G325600 Sobic003G396500--Sobic003G090000 Sobic003G396500--Sobic002G299200 Sobic003G396500--Sobic003G027000 Sobic003G396500--Sobic006G215800 Sobic006G152700 Sobic006G152700 Sobic003G396500--Sobic006G152700 Sobic003G396500--Sobic005G070301 Sobic003G396500--Sobic004G313400 Sobic006G215800--Sobic003G090000 Sobic006G215800--Sobic003G027000 Sobic006G215800--Sobic001G218600 Sobic006G215800--Sobic004G313400 Sobic006G215800--Sobic003G396500 Sobic006G215800--Sobic002G299200 Sobic008G098700 Sobic008G098700 Sobic006G215800--Sobic008G098700 Sobic006G215800--Sobic007G060100 Sobic006G215800--Sobic005G070301 Sobic003G044000--Sobic001G218600 Sobic003G044000--Sobic003G090000 Sobic003G044000--Sobic003G027000 Sobic003G044000--Sobic001G506400 Sobic001G131900 Sobic001G131900 Sobic003G044000--Sobic001G131900 Sobic003G044000--Sobic003G396500 Sobic003G044000--Sobic009G066600 Sobic003G044000--Sobic004G313400 Sobic003G293400 Sobic003G293400 Sobic003G044000--Sobic003G293400 Sobic009G152120--Sobic002G299200 Sobic009G152120--Sobic003G027000 Sobic009G152120--Sobic003G090000 Sobic009G152120--Sobic001G218600 Sobic009G152120--Sobic008G098700 Sobic009G152120--Sobic003G044000 Sobic009G152120--Sobic003G396500 Sobic009G152120--Sobic006G215800 Sobic009G152120--Sobic010G157200
Octagon: transcription factors


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