Gene annotation
Transcriptome id Sobic.005G070301.1
Synonym -
Functional annotation -
UniProt A0A1Z5RI83
Pfam PF01194
Panther DB PTHR23431 PTHR23431:SF2
NCBI CDD KOG3497; DNA-directed RNA polymerase, subunit RPB10
KEGG Orthology K03007; RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G61700 : RNA polymerases N / 8 kDa subunit
RAP-DB (Rice) LOC_Os11g08940.1 : RNA polymerases N 8 kDa subunit, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G218600 MATH domain containing protein, expressed -
2 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
3 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
4 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
5 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
6 Sobic.005G171900 expressed protein -
7 Sobic.003G258100 dynamin family protein, putative, expressed -
8 Sobic.003G001901 - -
9 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
10 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
11 Sobic.004G203000 cytochrome P450, putative, expressed K15402: fatty acid omega-hydroxylase
12 Sobic.007G060100 expressed protein -
13 Sobic.008G041300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
14 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
15 Sobic.001G506400 expressed protein -
16 Sobic.001G034200 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
17 Sobic.010G263400 expressed protein -
18 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
19 Sobic.001G242200 MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
20 Sobic.003G044000 lipase class 3 family protein, putative, expressed -


Gene co-expression network
sample Sobic005G070301 Sobic005G070301 Sobic001G218600 Sobic001G218600 Sobic005G070301--Sobic001G218600 Sobic003G027000 Sobic003G027000 Sobic005G070301--Sobic003G027000 Sobic004G313400 Sobic004G313400 Sobic005G070301--Sobic004G313400 Sobic007G144100 Sobic007G144100 Sobic005G070301--Sobic007G144100 Sobic003G090000 Sobic003G090000 Sobic005G070301--Sobic003G090000 Sobic005G171900 Sobic005G171900 Sobic005G070301--Sobic005G171900 Sobic003G258100 Sobic003G258100 Sobic005G070301--Sobic003G258100 Sobic003G001901 Sobic003G001901 Sobic005G070301--Sobic003G001901 Sobic003G396500 Sobic003G396500 Sobic005G070301--Sobic003G396500 Sobic001G218600--Sobic003G090000 Sobic001G218600--Sobic003G027000 Sobic001G218600--Sobic003G396500 Sobic001G218600--Sobic005G070301 Sobic001G506400 Sobic001G506400 Sobic001G218600--Sobic001G506400 Sobic003G044000 Sobic003G044000 Sobic001G218600--Sobic003G044000 Sobic007G060100 Sobic007G060100 Sobic001G218600--Sobic007G060100 Sobic010G157200 Sobic010G157200 Sobic001G218600--Sobic010G157200 Sobic010G263400 Sobic010G263400 Sobic001G218600--Sobic010G263400 Sobic003G027000--Sobic003G090000 Sobic003G027000--Sobic001G218600 Sobic002G299200 Sobic002G299200 Sobic003G027000--Sobic002G299200 Sobic003G027000--Sobic005G070301 Sobic003G027000--Sobic004G313400 Sobic003G027000--Sobic003G396500 Sobic006G215800 Sobic006G215800 Sobic003G027000--Sobic006G215800 Sobic003G027000--Sobic003G044000 Sobic009G152120 Sobic009G152120 Sobic003G027000--Sobic009G152120 Sobic004G313400--Sobic003G090000 Sobic004G313400--Sobic003G027000 Sobic004G313400--Sobic001G218600 Sobic004G313400--Sobic005G070301 Sobic004G313400--Sobic006G215800 Sobic002G151500 Sobic002G151500 Sobic004G313400--Sobic002G151500 Sobic004G313400--Sobic003G396500 Sobic009G066600 Sobic009G066600 Sobic004G313400--Sobic009G066600 Sobic004G313400--Sobic003G044000 Sobic007G144100--Sobic003G258100 Sobic003G352900 Sobic003G352900 Sobic007G144100--Sobic003G352900 Sobic001G076600 Sobic001G076600 Sobic007G144100--Sobic001G076600 Sobic003G217800 Sobic003G217800 Sobic007G144100--Sobic003G217800 Sobic010G058300 Sobic010G058300 Sobic007G144100--Sobic010G058300 Sobic007G144100--Sobic001G506400 Sobic002G299500 Sobic002G299500 Sobic007G144100--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic007G144100--Sobic004G045632 Sobic004G038400 Sobic004G038400 Sobic007G144100--Sobic004G038400 Sobic003G090000--Sobic003G027000 Sobic003G090000--Sobic001G218600 Sobic003G090000--Sobic002G299200 Sobic003G090000--Sobic006G215800 Sobic003G090000--Sobic003G396500 Sobic003G090000--Sobic004G313400 Sobic003G090000--Sobic003G044000 Sobic003G090000--Sobic005G070301 Sobic003G090000--Sobic010G157200 Sobic004G203000 Sobic004G203000 Sobic005G171900--Sobic004G203000 Sobic001G242200 Sobic001G242200 Sobic005G171900--Sobic001G242200 Sobic005G171900--Sobic005G070301 Sobic009G240500 Sobic009G240500 Sobic005G171900--Sobic009G240500 Sobic002G013550 Sobic002G013550 Sobic005G171900--Sobic002G013550 Sobic001G485000 Sobic001G485000 Sobic005G171900--Sobic001G485000 Sobic005G171900--Sobic001G218600 Sobic001G080800 Sobic001G080800 Sobic005G171900--Sobic001G080800 Sobic008G041300 Sobic008G041300 Sobic005G171900--Sobic008G041300 Sobic003G258100--Sobic007G144100 Sobic003G258100--Sobic003G217800 Sobic003G258100--Sobic010G263400 Sobic003G258100--Sobic001G076600 Sobic003G258100--Sobic003G352900 Sobic003G258100--Sobic001G506400 Sobic003G258100--Sobic007G060100 Sobic003G258100--Sobic002G299500 Sobic003G018000 Sobic003G018000 Sobic003G258100--Sobic003G018000 Sobic007G171700 Sobic007G171700 Sobic003G001901--Sobic007G171700 Sobic005G173700 Sobic005G173700 Sobic003G001901--Sobic005G173700 Sobic003G001901--Sobic007G144100 Sobic002G080450 Sobic002G080450 Sobic003G001901--Sobic002G080450 Sobic003G218000 Sobic003G218000 Sobic003G001901--Sobic003G218000 Sobic006G254400 Sobic006G254400 Sobic003G001901--Sobic006G254400 Sobic002G123300 Sobic002G123300 Sobic003G001901--Sobic002G123300 Sobic001G034200 Sobic001G034200 Sobic003G001901--Sobic001G034200 Sobic003G001901--Sobic008G041300 Sobic003G396500--Sobic001G218600 Sobic003G325600 Sobic003G325600 Sobic003G396500--Sobic003G325600 Sobic003G396500--Sobic003G090000 Sobic003G396500--Sobic002G299200 Sobic003G396500--Sobic003G027000 Sobic003G396500--Sobic006G215800 Sobic006G152700 Sobic006G152700 Sobic003G396500--Sobic006G152700 Sobic003G396500--Sobic005G070301 Sobic003G396500--Sobic004G313400
Octagon: transcription factors


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