Gene annotation
Transcriptome id Sobic.006G152700.2
Synonym Sb06g023020, YSL7
Functional annotation -
UniProt A0A1Z5RE21
Pfam PF03169
Panther DB PTHR31645 PTHR31645:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65730 : YELLOW STRIPE like 7
RAP-DB (Rice) LOC_Os04g44330.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a032072 , Zm00025a010612 , Zm00025a010614 , Zm00025a021051 , Zm00025a056538 , Zm00025a056539 , Zm00025a056537
Brachypodium KQJ82291 , KQJ82292 , KQK00455 , KQJ83669 , KQJ83668 , PNT69110 , PNT61516 , KQJ83671 , PNT60923
Barley HORVU2Hr1G120250.1 , HORVU2Hr1G120250.2 , HORVU2Hr1G070320.23 , HORVU2Hr1G090280.20 , HORVU2Hr1G090280.21 , HORVU2Hr1G090380.6 , HORVU2Hr1G090280.5 , HORVU6Hr1G059420.4 , HORVU6Hr1G059420.1 , HORVU6Hr1G059420.2 , HORVU6Hr1G059420.3 , HORVU2Hr1G070320.1 , HORVU2Hr1G070320.7 , HORVU2Hr1G070320.4 , HORVU2Hr1G070320.5 , HORVU2Hr1G090240.3 , HORVU2Hr1G090240.2 , HORVU2Hr1G090240.1 , HORVU2Hr1G070320.18 , HORVU2Hr1G070320.19 , HORVU2Hr1G090380.2 , HORVU2Hr1G090380.3 , HORVU2Hr1G090380.1 , HORVU2Hr1G090380.7 , HORVU2Hr1G090380.4 , HORVU2Hr1G090380.5 , HORVU2Hr1G070320.22 , HORVU2Hr1G099860.1 , HORVU2Hr1G099860.2 , HORVU2Hr1G099860.3 , HORVU2Hr1G070320.26 , HORVU2Hr1G070300.1 , HORVU2Hr1G070300.2 , HORVU2Hr1G090280.17 , HORVU2Hr1G090280.16 , HORVU2Hr1G090280.15 , HORVU2Hr1G090280.14 , HORVU2Hr1G090280.13 , HORVU2Hr1G090280.12 , HORVU2Hr1G090280.11 , HORVU2Hr1G090280.10 , HORVU2Hr1G090280.19 , HORVU2Hr1G090280.18 , HORVU2Hr1G070320.10 , HORVU2Hr1G070320.11 , HORVU2Hr1G090310.5 , HORVU2Hr1G070320.12 , HORVU2Hr1G090310.1 , HORVU2Hr1G090310.3 , HORVU2Hr1G090310.2 , HORVU2Hr1G090310.4
Wheat TraesCS2D02G283400 , TraesCS2D02G484200 , TraesCS2D02G484200 , TraesCS6D02G214100 , TraesCS2D02G373800 , TraesCS2B02G393600 , TraesCS2A02G484200 , TraesCS2A02G484200 , TraesCS2A02G284900 , TraesCS6D02G214300 , TraesCS6B02G262400 , TraesCS2B02G394500 , TraesCS2A02G376700 , TraesCS2B02G302000 , TraesCS2A02G284700 , TraesCS6A02G221100 , TraesCS2D02G374000 , TraesCS2B02G301800 , TraesCS2D02G081000 , TraesCS2A02G083400 , TraesCS2B02G097400 , TraesCS2B02G097400 , TraesCS2A02G377600 , TraesCS2A02G377200 , TraesCS2D02G283600 , TraesCS2B02G394400 , TraesCS2D02G373100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G012600 - -
2 Sobic.003G072700 expressed protein -
3 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
4 Sobic.003G377300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
5 Sobic.008G188800 ankyrin repeat domain-containing protein, putative, expressed -
6 Sobic.008G140600 targeting protein for Xklp2 containing protein, expressed -
7 Sobic.009G142500 OsMADS4 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
8 Sobic.007G146200 pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.003G258100 dynamin family protein, putative, expressed -
10 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
11 Sobic.002G151500 R-interacting factor 1, putative, expressed -
12 Sobic.010G263400 expressed protein -
13 Sobic.007G141600 ZOS8-05 - C2H2 zinc finger protein, expressed -
14 Sobic.001G171001 - -
15 Sobic.004G062600 OsFBX154 - F-box domain containing protein, expressed -
16 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
17 Sobic.004G022366 - -
18 Sobic.001G218600 MATH domain containing protein, expressed -
19 Sobic.003G217800 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
20 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant


Gene co-expression network
sample Sobic006G152700 Sobic006G152700 Sobic007G012600 Sobic007G012600 Sobic006G152700--Sobic007G012600 Sobic003G072700 Sobic003G072700 Sobic006G152700--Sobic003G072700 Sobic003G396500 Sobic003G396500 Sobic006G152700--Sobic003G396500 Sobic003G377300 Sobic003G377300 Sobic006G152700--Sobic003G377300 Sobic008G188800 Sobic008G188800 Sobic006G152700--Sobic008G188800 Sobic008G140600 Sobic008G140600 Sobic006G152700--Sobic008G140600 Sobic009G142500 Sobic009G142500 Sobic006G152700--Sobic009G142500 Sobic007G146200 Sobic007G146200 Sobic006G152700--Sobic007G146200 Sobic003G258100 Sobic003G258100 Sobic006G152700--Sobic003G258100 Sobic007G012600--Sobic006G152700 Sobic001G171001 Sobic001G171001 Sobic007G012600--Sobic001G171001 Sobic010G111750 Sobic010G111750 Sobic007G012600--Sobic010G111750 Sobic002G258000 Sobic002G258000 Sobic007G012600--Sobic002G258000 Sobic007G012600--Sobic003G396500 Sobic001G288000 Sobic001G288000 Sobic007G012600--Sobic001G288000 Sobic001G137500 Sobic001G137500 Sobic007G012600--Sobic001G137500 Sobic003G091300 Sobic003G091300 Sobic007G012600--Sobic003G091300 Sobic010G243100 Sobic010G243100 Sobic007G012600--Sobic010G243100 Sobic010G263400 Sobic010G263400 Sobic003G072700--Sobic010G263400 Sobic004G014500 Sobic004G014500 Sobic003G072700--Sobic004G014500 Sobic003G072700--Sobic006G152700 Sobic003G379000 Sobic003G379000 Sobic003G072700--Sobic003G379000 Sobic007G141600 Sobic007G141600 Sobic003G072700--Sobic007G141600 Sobic003G072700--Sobic003G258100 Sobic002G299500 Sobic002G299500 Sobic003G072700--Sobic002G299500 Sobic006G115900 Sobic006G115900 Sobic003G072700--Sobic006G115900 Sobic003G072700--Sobic007G146200 Sobic001G218600 Sobic001G218600 Sobic003G396500--Sobic001G218600 Sobic003G325600 Sobic003G325600 Sobic003G396500--Sobic003G325600 Sobic003G090000 Sobic003G090000 Sobic003G396500--Sobic003G090000 Sobic002G299200 Sobic002G299200 Sobic003G396500--Sobic002G299200 Sobic003G027000 Sobic003G027000 Sobic003G396500--Sobic003G027000 Sobic006G215800 Sobic006G215800 Sobic003G396500--Sobic006G215800 Sobic003G396500--Sobic006G152700 Sobic005G070301 Sobic005G070301 Sobic003G396500--Sobic005G070301 Sobic004G313400 Sobic004G313400 Sobic003G396500--Sobic004G313400 Sobic003G377300--Sobic008G140600 Sobic003G377300--Sobic009G142500 Sobic010G261800 Sobic010G261800 Sobic003G377300--Sobic010G261800 Sobic002G151500 Sobic002G151500 Sobic003G377300--Sobic002G151500 Sobic010G090000 Sobic010G090000 Sobic003G377300--Sobic010G090000 Sobic003G377300--Sobic007G141600 Sobic003G377300--Sobic006G152700 Sobic003G377300--Sobic003G379000 Sobic009G168100 Sobic009G168100 Sobic003G377300--Sobic009G168100 Sobic008G188800--Sobic007G146200 Sobic005G008850 Sobic005G008850 Sobic008G188800--Sobic005G008850 Sobic008G188800--Sobic006G152700 Sobic009G125800 Sobic009G125800 Sobic008G188800--Sobic009G125800 Sobic008G188800--Sobic008G140600 Sobic008G188800--Sobic003G377300 Sobic002G322700 Sobic002G322700 Sobic008G188800--Sobic002G322700 Sobic008G188800--Sobic003G072700 Sobic010G009700 Sobic010G009700 Sobic008G188800--Sobic010G009700 Sobic008G140600--Sobic003G377300 Sobic008G140600--Sobic009G168100 Sobic003G102100 Sobic003G102100 Sobic008G140600--Sobic003G102100 Sobic008G140600--Sobic010G090000 Sobic005G045800 Sobic005G045800 Sobic008G140600--Sobic005G045800 Sobic008G104000 Sobic008G104000 Sobic008G140600--Sobic008G104000 Sobic008G140600--Sobic007G141600 Sobic008G140600--Sobic010G261800 Sobic008G140600--Sobic002G322700 Sobic009G142500--Sobic003G377300 Sobic009G142500--Sobic003G379000 Sobic009G142500--Sobic010G261800 Sobic009G142500--Sobic003G072700 Sobic009G142500--Sobic010G090000 Sobic003G018000 Sobic003G018000 Sobic009G142500--Sobic003G018000 Sobic006G256400 Sobic006G256400 Sobic009G142500--Sobic006G256400 Sobic009G142500--Sobic006G152700 Sobic009G142500--Sobic010G263400 Sobic007G146200--Sobic002G322700 Sobic007G146200--Sobic008G188800 Sobic007G146200--Sobic003G072700 Sobic007G146200--Sobic010G009700 Sobic007G146200--Sobic009G125800 Sobic007G146200--Sobic006G152700 Sobic007G146200--Sobic005G045800 Sobic007G146200--Sobic007G141600 Sobic007G146200--Sobic008G140600 Sobic007G144100 Sobic007G144100 Sobic003G258100--Sobic007G144100 Sobic003G217800 Sobic003G217800 Sobic003G258100--Sobic003G217800 Sobic003G258100--Sobic010G263400 Sobic001G076600 Sobic001G076600 Sobic003G258100--Sobic001G076600 Sobic003G352900 Sobic003G352900 Sobic003G258100--Sobic003G352900 Sobic001G506400 Sobic001G506400 Sobic003G258100--Sobic001G506400 Sobic007G060100 Sobic007G060100 Sobic003G258100--Sobic007G060100 Sobic003G258100--Sobic002G299500 Sobic003G258100--Sobic003G018000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.