Gene annotation
Transcriptome id Sobic.010G261800.1
Synonym Sb10g029810, ATAP3, AP3
Functional annotation OsMADS16 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5Z1S2
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF173
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G54340 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os06g49840.1 : OsMADS16 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a026557 , Zm00025a041741
Brachypodium KQK17520
Barley HORVU1Hr1G063620.7 , HORVU1Hr1G063620.1 , HORVU1Hr1G063620.2 , HORVU1Hr1G063620.3 , HORVU6Hr1G032220.3 , HORVU6Hr1G032220.8 , HORVU6Hr1G032220.2 , HORVU6Hr1G032220.4 , HORVU7Hr1G091210.4 , HORVU7Hr1G091210.5 , HORVU7Hr1G091210.2 , HORVU7Hr1G091210.3 , HORVU7Hr1G091210.1 , HORVU6Hr1G032220.1 , HORVU6Hr1G032220.5 , HORVU6Hr1G032220.7 , HORVU6Hr1G032220.6
Wheat TraesCS6D02G147400 , TraesCS7A02G383800 , TraesCS7B02G286600 , TraesCS7B02G286600 , TraesCS6D02G120900 , TraesCS1B02G275000 , TraesCS6B02G159400 , TraesCS1A02G264300 , TraesCS6B02G186700 , TraesCS6A02G158100 , TraesCS7D02G380300
Populus -


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cDNA sequences
Sobic.010G261800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G090000 syntaxin, putative, expressed K08488: syntaxin 7
2 Sobic.006G256400 expressed protein -
3 Sobic.002G123400 OsRR7 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
4 Sobic.005G006900 RNA recognition motif containing protein, putative, expressed -
5 Sobic.003G090200 seven in absentia protein family domain containing protein, expressed -
6 Sobic.002G100300 OsFBD15 - F-box and FBD domain containing protein, expressed -
7 Sobic.005G212300 MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.003G354850 - -
9 Sobic.002G121100 OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
10 Sobic.009G240500 lipase class 3 family protein, putative, expressed -
11 Sobic.008G071700 - -
12 Sobic.006G018000 expressed protein -
13 Sobic.003G090400 seven in absentia protein family protein, expressed -
14 Sobic.002G298500 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
15 Sobic.005G201400 OsFBX222 - F-box domain containing protein, expressed -
16 Sobic.001G242200 MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.004G254700 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.001G502100 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
19 Sobic.003G379000 OsMADS2 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
20 Sobic.001G015000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed -


Gene co-expression network
sample Sobic010G261800 Sobic010G261800 Sobic010G090000 Sobic010G090000 Sobic010G261800--Sobic010G090000 Sobic006G256400 Sobic006G256400 Sobic010G261800--Sobic006G256400 Sobic002G123400 Sobic002G123400 Sobic010G261800--Sobic002G123400 Sobic005G006900 Sobic005G006900 Sobic010G261800--Sobic005G006900 Sobic003G090200 Sobic003G090200 Sobic010G261800--Sobic003G090200 Sobic002G100300 Sobic002G100300 Sobic010G261800--Sobic002G100300 Sobic005G212300 Sobic005G212300 Sobic010G261800--Sobic005G212300 Sobic003G354850 Sobic003G354850 Sobic010G261800--Sobic003G354850 Sobic002G121100 Sobic002G121100 Sobic010G261800--Sobic002G121100 Sobic004G256100 Sobic004G256100 Sobic010G090000--Sobic004G256100 Sobic010G090000--Sobic010G261800 Sobic001G474100 Sobic001G474100 Sobic010G090000--Sobic001G474100 Sobic007G193600 Sobic007G193600 Sobic010G090000--Sobic007G193600 Sobic003G102100 Sobic003G102100 Sobic010G090000--Sobic003G102100 Sobic001G103600 Sobic001G103600 Sobic010G090000--Sobic001G103600 Sobic001G502100 Sobic001G502100 Sobic010G090000--Sobic001G502100 Sobic003G018000 Sobic003G018000 Sobic010G090000--Sobic003G018000 Sobic010G090000--Sobic002G123400 Sobic005G201400 Sobic005G201400 Sobic006G256400--Sobic005G201400 Sobic006G256400--Sobic007G193600 Sobic001G241700 Sobic001G241700 Sobic006G256400--Sobic001G241700 Sobic002G188300 Sobic002G188300 Sobic006G256400--Sobic002G188300 Sobic006G256400--Sobic005G006900 Sobic008G155000 Sobic008G155000 Sobic006G256400--Sobic008G155000 Sobic007G133100 Sobic007G133100 Sobic006G256400--Sobic007G133100 Sobic010G202400 Sobic010G202400 Sobic006G256400--Sobic010G202400 Sobic004G002700 Sobic004G002700 Sobic006G256400--Sobic004G002700 Sobic002G123400--Sobic003G090200 Sobic002G123400--Sobic002G100300 Sobic002G123400--Sobic005G212300 Sobic002G123400--Sobic003G354850 Sobic002G123400--Sobic005G006900 Sobic008G071700 Sobic008G071700 Sobic002G123400--Sobic008G071700 Sobic006G018000 Sobic006G018000 Sobic002G123400--Sobic006G018000 Sobic004G254700 Sobic004G254700 Sobic002G123400--Sobic004G254700 Sobic002G298500 Sobic002G298500 Sobic002G123400--Sobic002G298500 Sobic005G006900--Sobic008G071700 Sobic005G006900--Sobic004G254700 Sobic006G276600 Sobic006G276600 Sobic005G006900--Sobic006G276600 Sobic002G019300 Sobic002G019300 Sobic005G006900--Sobic002G019300 Sobic009G149100 Sobic009G149100 Sobic005G006900--Sobic009G149100 Sobic005G006900--Sobic003G090200 Sobic005G006900--Sobic002G100300 Sobic005G006900--Sobic005G212300 Sobic005G006900--Sobic003G354850 Sobic003G090200--Sobic002G100300 Sobic003G090200--Sobic005G212300 Sobic003G090200--Sobic003G354850 Sobic003G090200--Sobic006G018000 Sobic003G090200--Sobic002G123400 Sobic003G090200--Sobic005G006900 Sobic003G090200--Sobic008G071700 Sobic003G090200--Sobic002G298500 Sobic003G090200--Sobic004G254700 Sobic002G100300--Sobic005G212300 Sobic002G100300--Sobic003G354850 Sobic002G100300--Sobic003G090200 Sobic002G100300--Sobic006G018000 Sobic002G100300--Sobic002G123400 Sobic002G100300--Sobic005G006900 Sobic002G100300--Sobic008G071700 Sobic002G100300--Sobic002G298500 Sobic002G100300--Sobic004G254700 Sobic005G212300--Sobic002G100300 Sobic005G212300--Sobic003G354850 Sobic005G212300--Sobic003G090200 Sobic005G212300--Sobic006G018000 Sobic005G212300--Sobic002G123400 Sobic005G212300--Sobic005G006900 Sobic005G212300--Sobic008G071700 Sobic005G212300--Sobic002G298500 Sobic005G212300--Sobic004G254700 Sobic003G354850--Sobic005G212300 Sobic003G354850--Sobic002G100300 Sobic003G354850--Sobic003G090200 Sobic003G354850--Sobic006G018000 Sobic003G354850--Sobic002G123400 Sobic003G354850--Sobic005G006900 Sobic003G354850--Sobic008G071700 Sobic003G354850--Sobic002G298500 Sobic003G354850--Sobic004G254700 Sobic007G219300 Sobic007G219300 Sobic002G121100--Sobic007G219300 Sobic003G180700 Sobic003G180700 Sobic002G121100--Sobic003G180700 Sobic001G355300 Sobic001G355300 Sobic002G121100--Sobic001G355300 Sobic009G067100 Sobic009G067100 Sobic002G121100--Sobic009G067100 Sobic007G083500 Sobic007G083500 Sobic002G121100--Sobic007G083500 Sobic001G092650 Sobic001G092650 Sobic002G121100--Sobic001G092650 Sobic002G121100--Sobic002G298500 Sobic010G043300 Sobic010G043300 Sobic002G121100--Sobic010G043300 Sobic002G121100--Sobic010G261800
Octagon: transcription factors


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