Gene annotation
Transcriptome id Sobic.003G379000.1
Synonym PI, Sb03g041860
Functional annotation OsMADS2 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5XEK8
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF211
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G20240 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os01g66030.1 : OsMADS2 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a037382 , Zm00025a026557 , Zm00025a019085 , Zm00025a037376 , Zm00025a041741 , Zm00025a037368
Brachypodium PNT73322 , KQK06172 , KQK10905
Barley HORVU1Hr1G063620.4 , HORVU1Hr1G063620.5 , HORVU1Hr1G063620.6 , HORVU1Hr1G063620.7 , HORVU1Hr1G063620.1 , HORVU1Hr1G063620.2 , HORVU1Hr1G063620.3 , HORVU3Hr1G091000.3 , HORVU3Hr1G091000.2 , HORVU3Hr1G091000.1 , HORVU3Hr1G091000.7 , HORVU3Hr1G091000.6 , HORVU3Hr1G091000.5 , HORVU3Hr1G091000.4 , HORVU3Hr1G091000.9 , HORVU3Hr1G091000.8 , HORVU3Hr1G091000.13 , HORVU3Hr1G091000.12 , HORVU3Hr1G091000.11 , HORVU3Hr1G091000.10
Wheat TraesCS3A02G406500 , TraesCS3A02G406500 , TraesCS1B02G275000 , TraesCS1A02G264300 , TraesCS3B02G440200 , TraesCS3D02G401700 , TraesCS3D02G401700 , TraesCS3B02G440200 , TraesCS3B02G440200 , TraesCS1D02G264500 , TraesCS1D02G264500
Populus -


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cDNA sequences
Sobic.003G379000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G256400 expressed protein -
2 Sobic.002G188300 - -
3 Sobic.006G200300 oligopeptide transporter, putative, expressed -
4 Sobic.007G193600 - -
5 Sobic.007G133100 - -
6 Sobic.008G155000 ankyrin, putative, expressed -
7 Sobic.004G003300 integral membrane protein DUF6 containing protein, expressed -
8 Sobic.002G307400 MATH domain containing protein, expressed -
9 Sobic.001G442400 - -
10 Sobic.001G538425 - -
11 Sobic.001G207900 - -
12 Sobic.005G016200 expressed protein -
13 Sobic.003G018000 expressed protein -
14 Sobic.005G185750 - -
15 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
16 Sobic.007G198900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.009G121200 stromal membrane-associated protein, putative, expressed K12486: stromal membrane-associated protein
18 Sobic.009G180600 CAMK_CAMK_like.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
19 Sobic.001G241700 MBTB52 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
20 Sobic.006G170500 aquaporin protein, putative, expressed K09873: aquaporin TIP


Gene co-expression network
sample Sobic003G379000 Sobic003G379000 Sobic006G256400 Sobic006G256400 Sobic003G379000--Sobic006G256400 Sobic002G188300 Sobic002G188300 Sobic003G379000--Sobic002G188300 Sobic006G200300 Sobic006G200300 Sobic003G379000--Sobic006G200300 Sobic007G193600 Sobic007G193600 Sobic003G379000--Sobic007G193600 Sobic007G133100 Sobic007G133100 Sobic003G379000--Sobic007G133100 Sobic008G155000 Sobic008G155000 Sobic003G379000--Sobic008G155000 Sobic004G003300 Sobic004G003300 Sobic003G379000--Sobic004G003300 Sobic002G307400 Sobic002G307400 Sobic003G379000--Sobic002G307400 Sobic001G442400 Sobic001G442400 Sobic003G379000--Sobic001G442400 Sobic005G201400 Sobic005G201400 Sobic006G256400--Sobic005G201400 Sobic006G256400--Sobic007G193600 Sobic001G241700 Sobic001G241700 Sobic006G256400--Sobic001G241700 Sobic006G256400--Sobic002G188300 Sobic005G006900 Sobic005G006900 Sobic006G256400--Sobic005G006900 Sobic006G256400--Sobic008G155000 Sobic006G256400--Sobic007G133100 Sobic010G202400 Sobic010G202400 Sobic006G256400--Sobic010G202400 Sobic004G002700 Sobic004G002700 Sobic006G256400--Sobic004G002700 Sobic001G538425 Sobic001G538425 Sobic002G188300--Sobic001G538425 Sobic005G016200 Sobic005G016200 Sobic002G188300--Sobic005G016200 Sobic006G170500 Sobic006G170500 Sobic002G188300--Sobic006G170500 Sobic007G198900 Sobic007G198900 Sobic002G188300--Sobic007G198900 Sobic002G188300--Sobic008G155000 Sobic004G057300 Sobic004G057300 Sobic002G188300--Sobic004G057300 Sobic007G081100 Sobic007G081100 Sobic002G188300--Sobic007G081100 Sobic002G188300--Sobic004G003300 Sobic003G191200 Sobic003G191200 Sobic002G188300--Sobic003G191200 Sobic006G200300--Sobic002G307400 Sobic001G364300 Sobic001G364300 Sobic006G200300--Sobic001G364300 Sobic008G088500 Sobic008G088500 Sobic006G200300--Sobic008G088500 Sobic005G058200 Sobic005G058200 Sobic006G200300--Sobic005G058200 Sobic010G196700 Sobic010G196700 Sobic006G200300--Sobic010G196700 Sobic008G168500 Sobic008G168500 Sobic006G200300--Sobic008G168500 Sobic005G007200 Sobic005G007200 Sobic006G200300--Sobic005G007200 Sobic007G082300 Sobic007G082300 Sobic006G200300--Sobic007G082300 Sobic004G086900 Sobic004G086900 Sobic006G200300--Sobic004G086900 Sobic001G474100 Sobic001G474100 Sobic007G193600--Sobic001G474100 Sobic009G047900 Sobic009G047900 Sobic007G193600--Sobic009G047900 Sobic004G256100 Sobic004G256100 Sobic007G193600--Sobic004G256100 Sobic001G518900 Sobic001G518900 Sobic007G193600--Sobic001G518900 Sobic008G144701 Sobic008G144701 Sobic007G193600--Sobic008G144701 Sobic007G193600--Sobic010G196700 Sobic001G103600 Sobic001G103600 Sobic007G193600--Sobic001G103600 Sobic007G193600--Sobic010G202400 Sobic007G193600--Sobic008G155000 Sobic009G095640 Sobic009G095640 Sobic007G133100--Sobic009G095640 Sobic005G185750 Sobic005G185750 Sobic007G133100--Sobic005G185750 Sobic008G168932 Sobic008G168932 Sobic007G133100--Sobic008G168932 Sobic005G068500 Sobic005G068500 Sobic007G133100--Sobic005G068500 Sobic004G289900 Sobic004G289900 Sobic007G133100--Sobic004G289900 Sobic001G103500 Sobic001G103500 Sobic007G133100--Sobic001G103500 Sobic008G181900 Sobic008G181900 Sobic007G133100--Sobic008G181900 Sobic001G513400 Sobic001G513400 Sobic007G133100--Sobic001G513400 Sobic006G044800 Sobic006G044800 Sobic007G133100--Sobic006G044800 Sobic008G155000--Sobic004G002700 Sobic008G155000--Sobic004G003300 Sobic008G155000--Sobic008G088500 Sobic008G155000--Sobic010G202400 Sobic002G096600 Sobic002G096600 Sobic008G155000--Sobic002G096600 Sobic005G058000 Sobic005G058000 Sobic008G155000--Sobic005G058000 Sobic008G155000--Sobic008G168500 Sobic008G155000--Sobic001G241700 Sobic008G095500 Sobic008G095500 Sobic008G155000--Sobic008G095500 Sobic001G021200 Sobic001G021200 Sobic004G003300--Sobic001G021200 Sobic004G003300--Sobic004G002700 Sobic003G428500 Sobic003G428500 Sobic004G003300--Sobic003G428500 Sobic004G003300--Sobic010G202400 Sobic004G003300--Sobic008G088500 Sobic004G003300--Sobic008G168500 Sobic004G003300--Sobic005G058000 Sobic004G003300--Sobic002G096600 Sobic004G003300--Sobic008G095500 Sobic005G221675 Sobic005G221675 Sobic002G307400--Sobic005G221675 Sobic007G081800 Sobic007G081800 Sobic002G307400--Sobic007G081800 Sobic002G307400--Sobic006G200300 Sobic005G058300 Sobic005G058300 Sobic002G307400--Sobic005G058300 Sobic004G100300 Sobic004G100300 Sobic002G307400--Sobic004G100300 Sobic002G307400--Sobic003G191200 Sobic002G384900 Sobic002G384900 Sobic002G307400--Sobic002G384900 Sobic002G307400--Sobic007G198900 Sobic006G224400 Sobic006G224400 Sobic002G307400--Sobic006G224400 Sobic008G172000 Sobic008G172000 Sobic001G442400--Sobic008G172000 Sobic001G068000 Sobic001G068000 Sobic001G442400--Sobic001G068000 Sobic008G057800 Sobic008G057800 Sobic001G442400--Sobic008G057800 Sobic001G442400--Sobic005G068500 Sobic010G274100 Sobic010G274100 Sobic001G442400--Sobic010G274100 Sobic002G323000 Sobic002G323000 Sobic001G442400--Sobic002G323000 Sobic004G024800 Sobic004G024800 Sobic001G442400--Sobic004G024800 Sobic010G034300 Sobic010G034300 Sobic001G442400--Sobic010G034300 Sobic001G364700 Sobic001G364700 Sobic001G442400--Sobic001G364700
Octagon: transcription factors


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