Gene annotation
Transcriptome id Sobic.010G090000.1
Synonym VAM3, SGR3, ATVAM3, SYP22, ATSYP22, Sb10g007790
Functional annotation syntaxin, putative, expressed
UniProt C5Z6Z6
Pfam PF14523
Panther DB PTHR19957 PTHR19957:SF120
NCBI CDD -
KEGG Orthology K08488; syntaxin 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46860 : Syntaxin/t-SNARE family protein
RAP-DB (Rice) LOC_Os01g15110.1 : syntaxin, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256100 transporter-related, putative, expressed -
2 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
3 Sobic.001G474100 pumilio-family RNA binding repeat domain containing protein, expressed -
4 Sobic.007G193600 - -
5 Sobic.003G102100 expressed protein -
6 Sobic.001G103600 gp176, putative, expressed -
7 Sobic.001G502100 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
8 Sobic.003G018000 expressed protein -
9 Sobic.002G123400 OsRR7 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
10 Sobic.004G158600 expressed protein -
11 Sobic.008G071700 - -
12 Sobic.008G124600 expressed protein -
13 Sobic.004G254700 plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.005G006900 RNA recognition motif containing protein, putative, expressed -
15 Sobic.002G019300 OsFBL33 - F-box domain and LRR containing protein, expressed -
16 Sobic.006G276600 auxin-induced protein 5NG4, putative, expressed -
17 Sobic.001G015000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed -
18 Sobic.006G256400 expressed protein -
19 Sobic.009G149100 GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
20 Sobic.009G047900 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1


Gene co-expression network
sample Sobic010G090000 Sobic010G090000 Sobic004G256100 Sobic004G256100 Sobic010G090000--Sobic004G256100 Sobic010G261800 Sobic010G261800 Sobic010G090000--Sobic010G261800 Sobic001G474100 Sobic001G474100 Sobic010G090000--Sobic001G474100 Sobic007G193600 Sobic007G193600 Sobic010G090000--Sobic007G193600 Sobic003G102100 Sobic003G102100 Sobic010G090000--Sobic003G102100 Sobic001G103600 Sobic001G103600 Sobic010G090000--Sobic001G103600 Sobic001G502100 Sobic001G502100 Sobic010G090000--Sobic001G502100 Sobic003G018000 Sobic003G018000 Sobic010G090000--Sobic003G018000 Sobic002G123400 Sobic002G123400 Sobic010G090000--Sobic002G123400 Sobic004G256100--Sobic001G474100 Sobic004G256100--Sobic007G193600 Sobic009G047900 Sobic009G047900 Sobic004G256100--Sobic009G047900 Sobic004G256100--Sobic001G103600 Sobic008G144701 Sobic008G144701 Sobic004G256100--Sobic008G144701 Sobic001G518900 Sobic001G518900 Sobic004G256100--Sobic001G518900 Sobic010G196700 Sobic010G196700 Sobic004G256100--Sobic010G196700 Sobic008G095500 Sobic008G095500 Sobic004G256100--Sobic008G095500 Sobic004G002700 Sobic004G002700 Sobic004G256100--Sobic004G002700 Sobic010G261800--Sobic010G090000 Sobic006G256400 Sobic006G256400 Sobic010G261800--Sobic006G256400 Sobic010G261800--Sobic002G123400 Sobic005G006900 Sobic005G006900 Sobic010G261800--Sobic005G006900 Sobic003G090200 Sobic003G090200 Sobic010G261800--Sobic003G090200 Sobic002G100300 Sobic002G100300 Sobic010G261800--Sobic002G100300 Sobic005G212300 Sobic005G212300 Sobic010G261800--Sobic005G212300 Sobic003G354850 Sobic003G354850 Sobic010G261800--Sobic003G354850 Sobic002G121100 Sobic002G121100 Sobic010G261800--Sobic002G121100 Sobic001G474100--Sobic009G047900 Sobic001G474100--Sobic007G193600 Sobic001G474100--Sobic004G256100 Sobic001G474100--Sobic008G144701 Sobic001G474100--Sobic010G196700 Sobic001G474100--Sobic001G518900 Sobic001G474100--Sobic001G103600 Sobic001G474100--Sobic008G095500 Sobic005G058200 Sobic005G058200 Sobic001G474100--Sobic005G058200 Sobic007G193600--Sobic001G474100 Sobic007G193600--Sobic009G047900 Sobic007G193600--Sobic004G256100 Sobic007G193600--Sobic001G518900 Sobic007G193600--Sobic008G144701 Sobic007G193600--Sobic010G196700 Sobic007G193600--Sobic001G103600 Sobic010G202400 Sobic010G202400 Sobic007G193600--Sobic010G202400 Sobic008G155000 Sobic008G155000 Sobic007G193600--Sobic008G155000 Sobic003G102100--Sobic010G090000 Sobic003G102100--Sobic003G018000 Sobic008G124600 Sobic008G124600 Sobic003G102100--Sobic008G124600 Sobic003G102100--Sobic004G256100 Sobic003G102100--Sobic001G474100 Sobic004G158600 Sobic004G158600 Sobic003G102100--Sobic004G158600 Sobic003G102100--Sobic001G502100 Sobic003G102100--Sobic007G193600 Sobic003G102100--Sobic001G103600 Sobic009G149100 Sobic009G149100 Sobic001G103600--Sobic009G149100 Sobic004G335400 Sobic004G335400 Sobic001G103600--Sobic004G335400 Sobic005G041500 Sobic005G041500 Sobic001G103600--Sobic005G041500 Sobic002G298600 Sobic002G298600 Sobic001G103600--Sobic002G298600 Sobic002G019300 Sobic002G019300 Sobic001G103600--Sobic002G019300 Sobic006G276600 Sobic006G276600 Sobic001G103600--Sobic006G276600 Sobic001G103600--Sobic004G002700 Sobic001G021200 Sobic001G021200 Sobic001G103600--Sobic001G021200 Sobic001G103600--Sobic008G095500 Sobic001G502100--Sobic002G298600 Sobic001G502100--Sobic004G256100 Sobic001G502100--Sobic001G103600 Sobic001G502100--Sobic005G006900 Sobic004G254700 Sobic004G254700 Sobic001G502100--Sobic004G254700 Sobic008G071700 Sobic008G071700 Sobic001G502100--Sobic008G071700 Sobic001G502100--Sobic006G276600 Sobic001G502100--Sobic002G019300 Sobic001G502100--Sobic009G149100 Sobic002G013550 Sobic002G013550 Sobic003G018000--Sobic002G013550 Sobic003G018000--Sobic001G518900 Sobic003G018000--Sobic001G103600 Sobic003G018000--Sobic009G149100 Sobic003G018000--Sobic008G095500 Sobic003G018000--Sobic004G335400 Sobic003G018000--Sobic004G002700 Sobic003G018000--Sobic005G041500 Sobic003G018000--Sobic006G276600 Sobic002G123400--Sobic003G090200 Sobic002G123400--Sobic002G100300 Sobic002G123400--Sobic005G212300 Sobic002G123400--Sobic003G354850 Sobic002G123400--Sobic005G006900 Sobic002G123400--Sobic008G071700 Sobic006G018000 Sobic006G018000 Sobic002G123400--Sobic006G018000 Sobic002G123400--Sobic004G254700 Sobic002G298500 Sobic002G298500 Sobic002G123400--Sobic002G298500
Octagon: transcription factors


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