Gene annotation
Transcriptome id Sobic.003G090400.1
Synonym Sb03g007560
Functional annotation seven in absentia protein family protein, expressed
UniProt C5XE41
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF44
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G62800 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g03300.1 : seven in absentia protein family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G240500 lipase class 3 family protein, putative, expressed -
2 Sobic.005G006900 RNA recognition motif containing protein, putative, expressed -
3 Sobic.003G090200 seven in absentia protein family domain containing protein, expressed -
4 Sobic.002G100300 OsFBD15 - F-box and FBD domain containing protein, expressed -
5 Sobic.005G212300 MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.003G354850 - -
7 Sobic.005G201400 OsFBX222 - F-box domain containing protein, expressed -
8 Sobic.002G123400 OsRR7 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
9 Sobic.006G018000 expressed protein -
10 Sobic.008G071700 - -
11 Sobic.001G242200 MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.002G298500 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
13 Sobic.006G124500 Regulator of chromosome condensation domain containing protein, expressed -
14 Sobic.004G254700 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.009G149100 GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
16 Sobic.006G276600 auxin-induced protein 5NG4, putative, expressed -
17 Sobic.002G019300 OsFBL33 - F-box domain and LRR containing protein, expressed -
18 Sobic.001G015000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed -
19 Sobic.005G041500 OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
20 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant


Gene co-expression network
sample Sobic003G090400 Sobic003G090400 Sobic009G240500 Sobic009G240500 Sobic003G090400--Sobic009G240500 Sobic005G006900 Sobic005G006900 Sobic003G090400--Sobic005G006900 Sobic003G090200 Sobic003G090200 Sobic003G090400--Sobic003G090200 Sobic002G100300 Sobic002G100300 Sobic003G090400--Sobic002G100300 Sobic005G212300 Sobic005G212300 Sobic003G090400--Sobic005G212300 Sobic003G354850 Sobic003G354850 Sobic003G090400--Sobic003G354850 Sobic005G201400 Sobic005G201400 Sobic003G090400--Sobic005G201400 Sobic002G123400 Sobic002G123400 Sobic003G090400--Sobic002G123400 Sobic006G018000 Sobic006G018000 Sobic003G090400--Sobic006G018000 Sobic001G242200 Sobic001G242200 Sobic009G240500--Sobic001G242200 Sobic009G149100 Sobic009G149100 Sobic009G240500--Sobic009G149100 Sobic009G240500--Sobic005G006900 Sobic008G071700 Sobic008G071700 Sobic009G240500--Sobic008G071700 Sobic004G254700 Sobic004G254700 Sobic009G240500--Sobic004G254700 Sobic006G276600 Sobic006G276600 Sobic009G240500--Sobic006G276600 Sobic002G019300 Sobic002G019300 Sobic009G240500--Sobic002G019300 Sobic005G041500 Sobic005G041500 Sobic009G240500--Sobic005G041500 Sobic004G002700 Sobic004G002700 Sobic009G240500--Sobic004G002700 Sobic005G006900--Sobic008G071700 Sobic005G006900--Sobic004G254700 Sobic005G006900--Sobic006G276600 Sobic005G006900--Sobic002G019300 Sobic005G006900--Sobic009G149100 Sobic005G006900--Sobic003G090200 Sobic005G006900--Sobic002G100300 Sobic005G006900--Sobic005G212300 Sobic005G006900--Sobic003G354850 Sobic003G090200--Sobic002G100300 Sobic003G090200--Sobic005G212300 Sobic003G090200--Sobic003G354850 Sobic003G090200--Sobic006G018000 Sobic003G090200--Sobic002G123400 Sobic003G090200--Sobic005G006900 Sobic003G090200--Sobic008G071700 Sobic002G298500 Sobic002G298500 Sobic003G090200--Sobic002G298500 Sobic003G090200--Sobic004G254700 Sobic002G100300--Sobic005G212300 Sobic002G100300--Sobic003G354850 Sobic002G100300--Sobic003G090200 Sobic002G100300--Sobic006G018000 Sobic002G100300--Sobic002G123400 Sobic002G100300--Sobic005G006900 Sobic002G100300--Sobic008G071700 Sobic002G100300--Sobic002G298500 Sobic002G100300--Sobic004G254700 Sobic005G212300--Sobic002G100300 Sobic005G212300--Sobic003G354850 Sobic005G212300--Sobic003G090200 Sobic005G212300--Sobic006G018000 Sobic005G212300--Sobic002G123400 Sobic005G212300--Sobic005G006900 Sobic005G212300--Sobic008G071700 Sobic005G212300--Sobic002G298500 Sobic005G212300--Sobic004G254700 Sobic003G354850--Sobic005G212300 Sobic003G354850--Sobic002G100300 Sobic003G354850--Sobic003G090200 Sobic003G354850--Sobic006G018000 Sobic003G354850--Sobic002G123400 Sobic003G354850--Sobic005G006900 Sobic003G354850--Sobic008G071700 Sobic003G354850--Sobic002G298500 Sobic003G354850--Sobic004G254700 Sobic006G256400 Sobic006G256400 Sobic005G201400--Sobic006G256400 Sobic005G201400--Sobic005G006900 Sobic005G201400--Sobic009G240500 Sobic005G201400--Sobic003G090400 Sobic001G241700 Sobic001G241700 Sobic005G201400--Sobic001G241700 Sobic005G201400--Sobic008G071700 Sobic005G201400--Sobic004G254700 Sobic005G201400--Sobic006G276600 Sobic005G201400--Sobic005G041500 Sobic002G123400--Sobic003G090200 Sobic002G123400--Sobic002G100300 Sobic002G123400--Sobic005G212300 Sobic002G123400--Sobic003G354850 Sobic002G123400--Sobic005G006900 Sobic002G123400--Sobic008G071700 Sobic002G123400--Sobic006G018000 Sobic002G123400--Sobic004G254700 Sobic002G123400--Sobic002G298500 Sobic006G018000--Sobic002G298500 Sobic006G018000--Sobic003G354850 Sobic006G018000--Sobic005G212300 Sobic006G018000--Sobic002G100300 Sobic006G018000--Sobic003G090200 Sobic006G018000--Sobic002G123400 Sobic001G355300 Sobic001G355300 Sobic006G018000--Sobic001G355300 Sobic009G067100 Sobic009G067100 Sobic006G018000--Sobic009G067100 Sobic003G180700 Sobic003G180700 Sobic006G018000--Sobic003G180700
Octagon: transcription factors


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