Gene annotation
| Transcriptome id | Sobic.006G124500.6,Sobic.006G124500.2,Sobic.006G124500.1,Sobic.006G124500.5,Sobic.006G124500.7,Sobic.006G124500.4,Sobic.006G124500.3 |
|---|---|
| Synonym | |
| Functional annotation | Regulator of chromosome condensation domain containing protein, expressed |
| UniProt | A0A1B6PLM7 , A0A1B6PLN9 |
| Pfam | PF00415 |
| Panther DB | PTHR22870 PTHR22870:SF198 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G26100 : Regulator of chromosome condensation (RCC1) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g38350.1 : Regulator of chromosome condensation domain containing protein, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | HORVU2Hr1G083590.1 |
| Wheat | TraesCS2B02G360200 , TraesCS2D02G340500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G018000 | expressed protein | - |
| 2 | Sobic.003G354850 | - | - |
| 3 | Sobic.005G212300 | MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 4 | Sobic.002G100300 | OsFBD15 - F-box and FBD domain containing protein, expressed | - |
| 5 | Sobic.003G090200 | seven in absentia protein family domain containing protein, expressed | - |
| 6 | Sobic.002G298500 | LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed | - |
| 7 | Sobic.002G123400 | OsRR7 type-A response regulator, expressed | K14492: two-component response regulator ARR-A family |
| 8 | Sobic.007G083500 | speckle-type POZ protein, putative, expressed | K10523: speckle-type POZ protein |
| 9 | Sobic.009G067100 | cytochrome P450, putative, expressed | - |
| 10 | Sobic.005G006900 | RNA recognition motif containing protein, putative, expressed | - |
| 11 | Sobic.001G355300 | aldose 1-epimerase, putative, expressed | K01785: galM, aldose 1-epimerase |
| 12 | Sobic.003G180700 | major facilitator superfamily antiporter, putative, expressed | - |
| 13 | Sobic.008G071700 | - | - |
| 14 | Sobic.007G219300 | BURP domain containing protein, expressed | - |
| 15 | Sobic.006G015700 | expressed protein | - |
| 16 | Sobic.001G242200 | MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 17 | Sobic.004G254700 | plastocyanin-like domain containing protein, putative, expressed | - |
| 18 | Sobic.009G240500 | lipase class 3 family protein, putative, expressed | - |
| 19 | Sobic.004G174600 | "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed | K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1 |
| 20 | Sobic.001G015000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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