Gene annotation
Transcriptome id Sobic.004G174600.1
Synonym P-glycoprotein, SbPGP13, Sb04g022480
Functional annotation "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
multidrug resistance protein, putative, expressed
UniProt C5XU71
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF141
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G28345 : ABC transporter family protein
RAP-DB (Rice) LOC_Os02g09720.1 : multidrug resistance protein, putative, expressed
MaizeGDB (Corn) Zm00025a034701 , Zm00025a020627 , Zm00025a005528
Brachypodium KQJ93765 , KQJ93764 , KQJ82960 , PNT61226
Barley HORVU6Hr1G035040.14 , HORVU6Hr1G035040.10 , HORVU6Hr1G035040.11 , HORVU6Hr1G035040.4 , HORVU6Hr1G035040.3 , HORVU6Hr1G035040.8 , HORVU6Hr1G035040.16 , HORVU6Hr1G035040.17 , HORVU6Hr1G035040.15 , HORVU6Hr1G035040.12
Wheat TraesCS4A02G370600 , TraesCS6D02G161200 , TraesCS6D02G161200 , TraesCS2B02G341800 , TraesCS2B02G341800 , TraesCS6A02G171800 , TraesCS6B02G199700 , TraesCS7D02G068400
Populus -


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cDNA sequences
Sobic.004G174600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G276600 auxin-induced protein 5NG4, putative, expressed -
2 Sobic.004G254700 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.005G041500 OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
4 Sobic.002G019300 OsFBL33 - F-box domain and LRR containing protein, expressed -
5 Sobic.009G149100 GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
6 Sobic.004G335400 expressed protein -
7 Sobic.008G071700 - -
8 Sobic.002G014300 OsFBX213 - F-box domain containing protein, expressed -
9 Sobic.002G298600 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
10 Sobic.003G428500 expressed protein -
11 Sobic.005G006900 RNA recognition motif containing protein, putative, expressed -
12 Sobic.001G021200 elongation factor, putative, expressed -
13 Sobic.001G241700 MBTB52 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.004G003300 integral membrane protein DUF6 containing protein, expressed -
15 Sobic.001G015000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed -
16 Sobic.010G202400 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.005G058000 expressed protein -
18 Sobic.002G096600 OsFBX15 - F-box domain containing protein, expressed -
19 Sobic.001G103600 gp176, putative, expressed -
20 Sobic.002G123400 OsRR7 type-A response regulator, expressed K14492: two-component response regulator ARR-A family


Gene co-expression network
sample Sobic004G174600 Sobic004G174600 Sobic006G276600 Sobic006G276600 Sobic004G174600--Sobic006G276600 Sobic004G254700 Sobic004G254700 Sobic004G174600--Sobic004G254700 Sobic005G041500 Sobic005G041500 Sobic004G174600--Sobic005G041500 Sobic002G019300 Sobic002G019300 Sobic004G174600--Sobic002G019300 Sobic009G149100 Sobic009G149100 Sobic004G174600--Sobic009G149100 Sobic004G335400 Sobic004G335400 Sobic004G174600--Sobic004G335400 Sobic008G071700 Sobic008G071700 Sobic004G174600--Sobic008G071700 Sobic002G014300 Sobic002G014300 Sobic004G174600--Sobic002G014300 Sobic002G298600 Sobic002G298600 Sobic004G174600--Sobic002G298600 Sobic006G276600--Sobic002G019300 Sobic006G276600--Sobic005G041500 Sobic006G276600--Sobic004G335400 Sobic006G276600--Sobic009G149100 Sobic006G276600--Sobic004G254700 Sobic006G276600--Sobic002G298600 Sobic001G241700 Sobic001G241700 Sobic006G276600--Sobic001G241700 Sobic006G276600--Sobic008G071700 Sobic010G202400 Sobic010G202400 Sobic006G276600--Sobic010G202400 Sobic004G254700--Sobic002G019300 Sobic004G254700--Sobic006G276600 Sobic004G254700--Sobic009G149100 Sobic004G254700--Sobic004G335400 Sobic004G254700--Sobic005G041500 Sobic004G254700--Sobic002G298600 Sobic004G254700--Sobic008G071700 Sobic005G006900 Sobic005G006900 Sobic004G254700--Sobic005G006900 Sobic004G254700--Sobic001G241700 Sobic005G041500--Sobic004G335400 Sobic005G041500--Sobic006G276600 Sobic005G041500--Sobic002G019300 Sobic005G041500--Sobic002G298600 Sobic005G041500--Sobic009G149100 Sobic005G041500--Sobic004G254700 Sobic005G041500--Sobic001G241700 Sobic005G041500--Sobic010G202400 Sobic001G021200 Sobic001G021200 Sobic005G041500--Sobic001G021200 Sobic002G019300--Sobic004G335400 Sobic002G019300--Sobic006G276600 Sobic002G019300--Sobic005G041500 Sobic002G019300--Sobic009G149100 Sobic002G019300--Sobic004G254700 Sobic002G019300--Sobic002G298600 Sobic002G019300--Sobic008G071700 Sobic002G019300--Sobic001G241700 Sobic002G019300--Sobic001G021200 Sobic009G149100--Sobic006G276600 Sobic009G149100--Sobic002G019300 Sobic009G149100--Sobic004G335400 Sobic009G149100--Sobic005G041500 Sobic009G149100--Sobic004G254700 Sobic009G149100--Sobic002G298600 Sobic009G149100--Sobic001G241700 Sobic009G149100--Sobic008G071700 Sobic001G103600 Sobic001G103600 Sobic009G149100--Sobic001G103600 Sobic004G335400--Sobic002G019300 Sobic004G335400--Sobic005G041500 Sobic004G335400--Sobic006G276600 Sobic004G335400--Sobic002G298600 Sobic004G335400--Sobic009G149100 Sobic004G335400--Sobic004G254700 Sobic004G335400--Sobic001G241700 Sobic004G335400--Sobic001G021200 Sobic004G335400--Sobic010G202400 Sobic008G071700--Sobic004G254700 Sobic008G071700--Sobic005G006900 Sobic008G071700--Sobic002G019300 Sobic008G071700--Sobic006G276600 Sobic008G071700--Sobic009G149100 Sobic008G071700--Sobic004G335400 Sobic008G071700--Sobic002G298600 Sobic008G071700--Sobic005G041500 Sobic003G090200 Sobic003G090200 Sobic008G071700--Sobic003G090200 Sobic010G012700 Sobic010G012700 Sobic002G014300--Sobic010G012700 Sobic005G201501 Sobic005G201501 Sobic002G014300--Sobic005G201501 Sobic003G428500 Sobic003G428500 Sobic002G014300--Sobic003G428500 Sobic003G075300 Sobic003G075300 Sobic002G014300--Sobic003G075300 Sobic001G332100 Sobic001G332100 Sobic002G014300--Sobic001G332100 Sobic002G000800 Sobic002G000800 Sobic002G014300--Sobic002G000800 Sobic005G077001 Sobic005G077001 Sobic002G014300--Sobic005G077001 Sobic002G014300--Sobic001G021200 Sobic010G129450 Sobic010G129450 Sobic002G014300--Sobic010G129450 Sobic002G298600--Sobic004G335400 Sobic002G298600--Sobic002G019300 Sobic002G298600--Sobic005G041500 Sobic002G298600--Sobic006G276600 Sobic002G298600--Sobic009G149100 Sobic002G298600--Sobic004G254700 Sobic002G298600--Sobic001G241700 Sobic002G298600--Sobic001G021200 Sobic002G298600--Sobic010G202400
Octagon: transcription factors


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