Gene annotation
Transcriptome id Sobic.009G142500.1
Synonym PI, Sb09g020770
Functional annotation OsMADS4 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5YY69
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF211
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G20240 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os05g34940.2 : OsMADS4 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a037382 , Zm00025a026557 , Zm00025a037376 , Zm00025a041741 , Zm00025a037368
Brachypodium PNT73322 , KQK06172 , KQK10905
Barley HORVU1Hr1G063620.4 , HORVU1Hr1G063620.5 , HORVU1Hr1G063620.6 , HORVU1Hr1G063620.7 , HORVU1Hr1G063620.1 , HORVU1Hr1G063620.2 , HORVU1Hr1G063620.3 , HORVU3Hr1G091000.3 , HORVU3Hr1G091000.2 , HORVU3Hr1G091000.1 , HORVU3Hr1G091000.7 , HORVU3Hr1G091000.6 , HORVU3Hr1G091000.5 , HORVU3Hr1G091000.4 , HORVU3Hr1G091000.9 , HORVU3Hr1G091000.8 , HORVU3Hr1G091000.13 , HORVU3Hr1G091000.12 , HORVU3Hr1G091000.11 , HORVU3Hr1G091000.10
Wheat TraesCS3A02G406500 , TraesCS3A02G406500 , TraesCS1B02G275000 , TraesCS1A02G264300 , TraesCS3B02G440200 , TraesCS3D02G401700 , TraesCS3D02G401700 , TraesCS3B02G440200 , TraesCS3B02G440200 , TraesCS1D02G264500 , TraesCS1D02G264500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G377300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
2 Sobic.003G379000 OsMADS2 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
3 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
4 Sobic.003G072700 expressed protein -
5 Sobic.010G090000 syntaxin, putative, expressed K08488: syntaxin 7
6 Sobic.003G018000 expressed protein -
7 Sobic.006G256400 expressed protein -
8 Sobic.006G152700 - -
9 Sobic.010G263400 expressed protein -
10 Sobic.007G141600 ZOS8-05 - C2H2 zinc finger protein, expressed -
11 Sobic.008G140600 targeting protein for Xklp2 containing protein, expressed -
12 Sobic.003G258100 dynamin family protein, putative, expressed -
13 Sobic.007G193600 - -
14 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
15 Sobic.006G200300 oligopeptide transporter, putative, expressed -
16 Sobic.002G299500 expressed protein -
17 Sobic.002G151500 R-interacting factor 1, putative, expressed -
18 Sobic.010G057600 expressed protein -
19 Sobic.008G124600 expressed protein -
20 Sobic.004G250800 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31


Gene co-expression network
sample Sobic009G142500 Sobic009G142500 Sobic003G377300 Sobic003G377300 Sobic009G142500--Sobic003G377300 Sobic003G379000 Sobic003G379000 Sobic009G142500--Sobic003G379000 Sobic010G261800 Sobic010G261800 Sobic009G142500--Sobic010G261800 Sobic003G072700 Sobic003G072700 Sobic009G142500--Sobic003G072700 Sobic010G090000 Sobic010G090000 Sobic009G142500--Sobic010G090000 Sobic003G018000 Sobic003G018000 Sobic009G142500--Sobic003G018000 Sobic006G256400 Sobic006G256400 Sobic009G142500--Sobic006G256400 Sobic006G152700 Sobic006G152700 Sobic009G142500--Sobic006G152700 Sobic010G263400 Sobic010G263400 Sobic009G142500--Sobic010G263400 Sobic008G140600 Sobic008G140600 Sobic003G377300--Sobic008G140600 Sobic003G377300--Sobic009G142500 Sobic003G377300--Sobic010G261800 Sobic002G151500 Sobic002G151500 Sobic003G377300--Sobic002G151500 Sobic003G377300--Sobic010G090000 Sobic007G141600 Sobic007G141600 Sobic003G377300--Sobic007G141600 Sobic003G377300--Sobic006G152700 Sobic003G377300--Sobic003G379000 Sobic009G168100 Sobic009G168100 Sobic003G377300--Sobic009G168100 Sobic003G379000--Sobic006G256400 Sobic002G188300 Sobic002G188300 Sobic003G379000--Sobic002G188300 Sobic006G200300 Sobic006G200300 Sobic003G379000--Sobic006G200300 Sobic007G193600 Sobic007G193600 Sobic003G379000--Sobic007G193600 Sobic007G133100 Sobic007G133100 Sobic003G379000--Sobic007G133100 Sobic008G155000 Sobic008G155000 Sobic003G379000--Sobic008G155000 Sobic004G003300 Sobic004G003300 Sobic003G379000--Sobic004G003300 Sobic002G307400 Sobic002G307400 Sobic003G379000--Sobic002G307400 Sobic001G442400 Sobic001G442400 Sobic003G379000--Sobic001G442400 Sobic010G261800--Sobic010G090000 Sobic010G261800--Sobic006G256400 Sobic002G123400 Sobic002G123400 Sobic010G261800--Sobic002G123400 Sobic005G006900 Sobic005G006900 Sobic010G261800--Sobic005G006900 Sobic003G090200 Sobic003G090200 Sobic010G261800--Sobic003G090200 Sobic002G100300 Sobic002G100300 Sobic010G261800--Sobic002G100300 Sobic005G212300 Sobic005G212300 Sobic010G261800--Sobic005G212300 Sobic003G354850 Sobic003G354850 Sobic010G261800--Sobic003G354850 Sobic002G121100 Sobic002G121100 Sobic010G261800--Sobic002G121100 Sobic003G072700--Sobic010G263400 Sobic004G014500 Sobic004G014500 Sobic003G072700--Sobic004G014500 Sobic003G072700--Sobic006G152700 Sobic003G072700--Sobic003G379000 Sobic003G072700--Sobic007G141600 Sobic003G258100 Sobic003G258100 Sobic003G072700--Sobic003G258100 Sobic002G299500 Sobic002G299500 Sobic003G072700--Sobic002G299500 Sobic006G115900 Sobic006G115900 Sobic003G072700--Sobic006G115900 Sobic007G146200 Sobic007G146200 Sobic003G072700--Sobic007G146200 Sobic004G256100 Sobic004G256100 Sobic010G090000--Sobic004G256100 Sobic010G090000--Sobic010G261800 Sobic001G474100 Sobic001G474100 Sobic010G090000--Sobic001G474100 Sobic010G090000--Sobic007G193600 Sobic003G102100 Sobic003G102100 Sobic010G090000--Sobic003G102100 Sobic001G103600 Sobic001G103600 Sobic010G090000--Sobic001G103600 Sobic001G502100 Sobic001G502100 Sobic010G090000--Sobic001G502100 Sobic010G090000--Sobic003G018000 Sobic010G090000--Sobic002G123400 Sobic002G013550 Sobic002G013550 Sobic003G018000--Sobic002G013550 Sobic001G518900 Sobic001G518900 Sobic003G018000--Sobic001G518900 Sobic003G018000--Sobic001G103600 Sobic009G149100 Sobic009G149100 Sobic003G018000--Sobic009G149100 Sobic008G095500 Sobic008G095500 Sobic003G018000--Sobic008G095500 Sobic004G335400 Sobic004G335400 Sobic003G018000--Sobic004G335400 Sobic004G002700 Sobic004G002700 Sobic003G018000--Sobic004G002700 Sobic005G041500 Sobic005G041500 Sobic003G018000--Sobic005G041500 Sobic006G276600 Sobic006G276600 Sobic003G018000--Sobic006G276600 Sobic005G201400 Sobic005G201400 Sobic006G256400--Sobic005G201400 Sobic006G256400--Sobic007G193600 Sobic001G241700 Sobic001G241700 Sobic006G256400--Sobic001G241700 Sobic006G256400--Sobic002G188300 Sobic006G256400--Sobic005G006900 Sobic006G256400--Sobic008G155000 Sobic006G256400--Sobic007G133100 Sobic010G202400 Sobic010G202400 Sobic006G256400--Sobic010G202400 Sobic006G256400--Sobic004G002700 Sobic007G012600 Sobic007G012600 Sobic006G152700--Sobic007G012600 Sobic006G152700--Sobic003G072700 Sobic003G396500 Sobic003G396500 Sobic006G152700--Sobic003G396500 Sobic006G152700--Sobic003G377300 Sobic008G188800 Sobic008G188800 Sobic006G152700--Sobic008G188800 Sobic006G152700--Sobic008G140600 Sobic006G152700--Sobic009G142500 Sobic006G152700--Sobic007G146200 Sobic006G152700--Sobic003G258100 Sobic007G060100 Sobic007G060100 Sobic010G263400--Sobic007G060100 Sobic010G263400--Sobic003G258100 Sobic010G263400--Sobic003G072700 Sobic007G144100 Sobic007G144100 Sobic010G263400--Sobic007G144100 Sobic004G168900 Sobic004G168900 Sobic010G263400--Sobic004G168900 Sobic010G263400--Sobic002G299500 Sobic003G217800 Sobic003G217800 Sobic010G263400--Sobic003G217800 Sobic004G038400 Sobic004G038400 Sobic010G263400--Sobic004G038400 Sobic004G250800 Sobic004G250800 Sobic010G263400--Sobic004G250800
Octagon: transcription factors


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