Gene annotation
Transcriptome id Sobic.003G377300.1
Synonym CHR6, PKL, GYM, SSL2, CHD3, Sb03g041720
Functional annotation expressed protein
UniProt A0A1B6Q7B1
Pfam PF04851 PF00385 PF00271
Panther DB PTHR10799 PTHR10799:SF556
NCBI CDD KOG0383; Predicted helicase
KEGG Orthology K11643; CHD4, chromodomain-helicase-DNA-binding protein 4
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G25170 : chromatin remodeling factor CHD3 (PICKLE)
RAP-DB (Rice) LOC_Os01g65850.1 : CHD3-type chromatin-remodeling factor PICKLE, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT73312 , PNT73313 , PNT73310 , PNT73311 , PNT73309 , PNT73308 , PNT73307 , PNT73306
Barley -
Wheat TraesCS3D02G403600 , TraesCS3A02G408500 , TraesCS3A02G408500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G140600 targeting protein for Xklp2 containing protein, expressed -
2 Sobic.009G142500 OsMADS4 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
3 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
4 Sobic.002G151500 R-interacting factor 1, putative, expressed -
5 Sobic.010G090000 syntaxin, putative, expressed K08488: syntaxin 7
6 Sobic.007G141600 ZOS8-05 - C2H2 zinc finger protein, expressed -
7 Sobic.006G152700 - -
8 Sobic.003G379000 OsMADS2 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
9 Sobic.009G168100 expressed protein -
10 Sobic.005G008850 - -
11 Sobic.008G188800 ankyrin repeat domain-containing protein, putative, expressed -
12 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
13 Sobic.003G072700 expressed protein -
14 Sobic.003G102100 expressed protein -
15 Sobic.006G256400 expressed protein -
16 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
17 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
18 Sobic.002G299500 expressed protein -
19 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
20 Sobic.007G146200 pectinesterase, putative, expressed K01051: pectinesterase


Gene co-expression network
sample Sobic003G377300 Sobic003G377300 Sobic008G140600 Sobic008G140600 Sobic003G377300--Sobic008G140600 Sobic009G142500 Sobic009G142500 Sobic003G377300--Sobic009G142500 Sobic010G261800 Sobic010G261800 Sobic003G377300--Sobic010G261800 Sobic002G151500 Sobic002G151500 Sobic003G377300--Sobic002G151500 Sobic010G090000 Sobic010G090000 Sobic003G377300--Sobic010G090000 Sobic007G141600 Sobic007G141600 Sobic003G377300--Sobic007G141600 Sobic006G152700 Sobic006G152700 Sobic003G377300--Sobic006G152700 Sobic003G379000 Sobic003G379000 Sobic003G377300--Sobic003G379000 Sobic009G168100 Sobic009G168100 Sobic003G377300--Sobic009G168100 Sobic008G140600--Sobic003G377300 Sobic008G140600--Sobic009G168100 Sobic003G102100 Sobic003G102100 Sobic008G140600--Sobic003G102100 Sobic008G140600--Sobic010G090000 Sobic005G045800 Sobic005G045800 Sobic008G140600--Sobic005G045800 Sobic008G104000 Sobic008G104000 Sobic008G140600--Sobic008G104000 Sobic008G140600--Sobic007G141600 Sobic008G140600--Sobic010G261800 Sobic002G322700 Sobic002G322700 Sobic008G140600--Sobic002G322700 Sobic009G142500--Sobic003G377300 Sobic009G142500--Sobic003G379000 Sobic009G142500--Sobic010G261800 Sobic003G072700 Sobic003G072700 Sobic009G142500--Sobic003G072700 Sobic009G142500--Sobic010G090000 Sobic003G018000 Sobic003G018000 Sobic009G142500--Sobic003G018000 Sobic006G256400 Sobic006G256400 Sobic009G142500--Sobic006G256400 Sobic009G142500--Sobic006G152700 Sobic010G263400 Sobic010G263400 Sobic009G142500--Sobic010G263400 Sobic010G261800--Sobic010G090000 Sobic010G261800--Sobic006G256400 Sobic002G123400 Sobic002G123400 Sobic010G261800--Sobic002G123400 Sobic005G006900 Sobic005G006900 Sobic010G261800--Sobic005G006900 Sobic003G090200 Sobic003G090200 Sobic010G261800--Sobic003G090200 Sobic002G100300 Sobic002G100300 Sobic010G261800--Sobic002G100300 Sobic005G212300 Sobic005G212300 Sobic010G261800--Sobic005G212300 Sobic003G354850 Sobic003G354850 Sobic010G261800--Sobic003G354850 Sobic002G121100 Sobic002G121100 Sobic010G261800--Sobic002G121100 Sobic001G131900 Sobic001G131900 Sobic002G151500--Sobic001G131900 Sobic004G313400 Sobic004G313400 Sobic002G151500--Sobic004G313400 Sobic010G009700 Sobic010G009700 Sobic002G151500--Sobic010G009700 Sobic002G151500--Sobic003G377300 Sobic003G352900 Sobic003G352900 Sobic002G151500--Sobic003G352900 Sobic007G144100 Sobic007G144100 Sobic002G151500--Sobic007G144100 Sobic003G258100 Sobic003G258100 Sobic002G151500--Sobic003G258100 Sobic002G151500--Sobic005G045800 Sobic004G298600 Sobic004G298600 Sobic002G151500--Sobic004G298600 Sobic004G256100 Sobic004G256100 Sobic010G090000--Sobic004G256100 Sobic010G090000--Sobic010G261800 Sobic001G474100 Sobic001G474100 Sobic010G090000--Sobic001G474100 Sobic007G193600 Sobic007G193600 Sobic010G090000--Sobic007G193600 Sobic010G090000--Sobic003G102100 Sobic001G103600 Sobic001G103600 Sobic010G090000--Sobic001G103600 Sobic001G502100 Sobic001G502100 Sobic010G090000--Sobic001G502100 Sobic010G090000--Sobic003G018000 Sobic010G090000--Sobic002G123400 Sobic002G299500 Sobic002G299500 Sobic007G141600--Sobic002G299500 Sobic001G385300 Sobic001G385300 Sobic007G141600--Sobic001G385300 Sobic008G171900 Sobic008G171900 Sobic007G141600--Sobic008G171900 Sobic008G007600 Sobic008G007600 Sobic007G141600--Sobic008G007600 Sobic007G141600--Sobic003G352900 Sobic001G076600 Sobic001G076600 Sobic007G141600--Sobic001G076600 Sobic009G163100 Sobic009G163100 Sobic007G141600--Sobic009G163100 Sobic007G141600--Sobic007G144100 Sobic006G265800 Sobic006G265800 Sobic007G141600--Sobic006G265800 Sobic007G012600 Sobic007G012600 Sobic006G152700--Sobic007G012600 Sobic006G152700--Sobic003G072700 Sobic003G396500 Sobic003G396500 Sobic006G152700--Sobic003G396500 Sobic006G152700--Sobic003G377300 Sobic008G188800 Sobic008G188800 Sobic006G152700--Sobic008G188800 Sobic006G152700--Sobic008G140600 Sobic006G152700--Sobic009G142500 Sobic007G146200 Sobic007G146200 Sobic006G152700--Sobic007G146200 Sobic006G152700--Sobic003G258100 Sobic003G379000--Sobic006G256400 Sobic002G188300 Sobic002G188300 Sobic003G379000--Sobic002G188300 Sobic006G200300 Sobic006G200300 Sobic003G379000--Sobic006G200300 Sobic003G379000--Sobic007G193600 Sobic007G133100 Sobic007G133100 Sobic003G379000--Sobic007G133100 Sobic008G155000 Sobic008G155000 Sobic003G379000--Sobic008G155000 Sobic004G003300 Sobic004G003300 Sobic003G379000--Sobic004G003300 Sobic002G307400 Sobic002G307400 Sobic003G379000--Sobic002G307400 Sobic001G442400 Sobic001G442400 Sobic003G379000--Sobic001G442400 Sobic009G168100--Sobic008G140600 Sobic001G359000 Sobic001G359000 Sobic009G168100--Sobic001G359000 Sobic009G168100--Sobic005G045800 Sobic008G073500 Sobic008G073500 Sobic009G168100--Sobic008G073500 Sobic009G168100--Sobic010G090000 Sobic003G376900 Sobic003G376900 Sobic009G168100--Sobic003G376900 Sobic009G168100--Sobic003G377300 Sobic003G177600 Sobic003G177600 Sobic009G168100--Sobic003G177600 Sobic009G168100--Sobic001G385300
Octagon: transcription factors


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