Gene annotation
Transcriptome id Sobic.008G070600.1
Synonym ATSGS3, SGS3, Sb08g006200
Functional annotation leafbladeless1, putative, expressed
UniProt C5YTI1
Pfam PF03470 PF03468
Panther DB PTHR21596 PTHR21596:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23570 : XS domain-containing protein / XS zinc finger domain-containing protein-related
RAP-DB (Rice) LOC_Os12g09580.1 : leafbladeless1, putative, expressed
MaizeGDB (Corn) Zm00025a022214 , Zm00025a023404 , Zm00025a040608 , Zm00025a038032 , Zm00025a025655
Brachypodium KQJ91911
Barley HORVU5Hr1G033640.3 , HORVU5Hr1G033640.2 , HORVU5Hr1G033640.6 , HORVU5Hr1G033640.5 , HORVU5Hr1G033640.4
Wheat TraesCS5B02G115000 , TraesCS5B02G115000 , TraesCS5A02G115400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G157200 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
2 Sobic.009G168150 - -
3 Sobic.010G232300 ubiquitin family protein, expressed -
4 Sobic.009G047066 - -
5 Sobic.005G070301 - K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
6 Sobic.003G258100 dynamin family protein, putative, expressed -
7 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
8 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
9 Sobic.001G218600 MATH domain containing protein, expressed -
10 Sobic.010G263400 expressed protein -
11 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
12 Sobic.003G018000 expressed protein -
13 Sobic.002G151500 R-interacting factor 1, putative, expressed -
14 Sobic.010G263700 expressed protein -
15 Sobic.001G034200 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
16 Sobic.006G152700 - -
17 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
18 Sobic.001G242200 MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
20 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein


Gene co-expression network
sample Sobic008G070600 Sobic008G070600 Sobic010G157200 Sobic010G157200 Sobic008G070600--Sobic010G157200 Sobic009G168150 Sobic009G168150 Sobic008G070600--Sobic009G168150 Sobic010G232300 Sobic010G232300 Sobic008G070600--Sobic010G232300 Sobic009G047066 Sobic009G047066 Sobic008G070600--Sobic009G047066 Sobic005G070301 Sobic005G070301 Sobic008G070600--Sobic005G070301 Sobic003G258100 Sobic003G258100 Sobic008G070600--Sobic003G258100 Sobic007G144100 Sobic007G144100 Sobic008G070600--Sobic007G144100 Sobic004G313400 Sobic004G313400 Sobic008G070600--Sobic004G313400 Sobic001G218600 Sobic001G218600 Sobic008G070600--Sobic001G218600 Sobic010G157200--Sobic001G218600 Sobic010G263400 Sobic010G263400 Sobic010G157200--Sobic010G263400 Sobic010G157200--Sobic009G168150 Sobic007G060100 Sobic007G060100 Sobic010G157200--Sobic007G060100 Sobic001G506400 Sobic001G506400 Sobic010G157200--Sobic001G506400 Sobic010G157200--Sobic007G144100 Sobic004G038400 Sobic004G038400 Sobic010G157200--Sobic004G038400 Sobic010G157200--Sobic003G258100 Sobic010G058300 Sobic010G058300 Sobic010G157200--Sobic010G058300 Sobic009G168150--Sobic007G144100 Sobic003G018000 Sobic003G018000 Sobic009G168150--Sobic003G018000 Sobic008G124600 Sobic008G124600 Sobic009G168150--Sobic008G124600 Sobic003G217800 Sobic003G217800 Sobic009G168150--Sobic003G217800 Sobic007G063800 Sobic007G063800 Sobic009G168150--Sobic007G063800 Sobic009G168150--Sobic010G157200 Sobic009G168150--Sobic003G258100 Sobic002G013550 Sobic002G013550 Sobic009G168150--Sobic002G013550 Sobic002G299500 Sobic002G299500 Sobic009G168150--Sobic002G299500 Sobic001G034200 Sobic001G034200 Sobic010G232300--Sobic001G034200 Sobic002G080450 Sobic002G080450 Sobic010G232300--Sobic002G080450 Sobic003G127900 Sobic003G127900 Sobic010G232300--Sobic003G127900 Sobic003G065700 Sobic003G065700 Sobic010G232300--Sobic003G065700 Sobic007G112832 Sobic007G112832 Sobic010G232300--Sobic007G112832 Sobic008G056800 Sobic008G056800 Sobic010G232300--Sobic008G056800 Sobic010G129450 Sobic010G129450 Sobic010G232300--Sobic010G129450 Sobic003G218000 Sobic003G218000 Sobic010G232300--Sobic003G218000 Sobic005G052400 Sobic005G052400 Sobic010G232300--Sobic005G052400 Sobic007G125200 Sobic007G125200 Sobic009G047066--Sobic007G125200 Sobic001G186700 Sobic001G186700 Sobic009G047066--Sobic001G186700 Sobic009G047066--Sobic001G034200 Sobic010G012700 Sobic010G012700 Sobic009G047066--Sobic010G012700 Sobic001G332100 Sobic001G332100 Sobic009G047066--Sobic001G332100 Sobic001G144150 Sobic001G144150 Sobic009G047066--Sobic001G144150 Sobic002G014300 Sobic002G014300 Sobic009G047066--Sobic002G014300 Sobic005G191200 Sobic005G191200 Sobic009G047066--Sobic005G191200 Sobic001G149201 Sobic001G149201 Sobic009G047066--Sobic001G149201 Sobic005G070301--Sobic001G218600 Sobic003G027000 Sobic003G027000 Sobic005G070301--Sobic003G027000 Sobic005G070301--Sobic004G313400 Sobic005G070301--Sobic007G144100 Sobic003G090000 Sobic003G090000 Sobic005G070301--Sobic003G090000 Sobic005G171900 Sobic005G171900 Sobic005G070301--Sobic005G171900 Sobic005G070301--Sobic003G258100 Sobic003G001901 Sobic003G001901 Sobic005G070301--Sobic003G001901 Sobic003G396500 Sobic003G396500 Sobic005G070301--Sobic003G396500 Sobic003G258100--Sobic007G144100 Sobic003G258100--Sobic003G217800 Sobic003G258100--Sobic010G263400 Sobic001G076600 Sobic001G076600 Sobic003G258100--Sobic001G076600 Sobic003G352900 Sobic003G352900 Sobic003G258100--Sobic003G352900 Sobic003G258100--Sobic001G506400 Sobic003G258100--Sobic007G060100 Sobic003G258100--Sobic002G299500 Sobic003G258100--Sobic003G018000 Sobic007G144100--Sobic003G258100 Sobic007G144100--Sobic003G352900 Sobic007G144100--Sobic001G076600 Sobic007G144100--Sobic003G217800 Sobic007G144100--Sobic010G058300 Sobic007G144100--Sobic001G506400 Sobic007G144100--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic007G144100--Sobic004G045632 Sobic007G144100--Sobic004G038400 Sobic004G313400--Sobic003G090000 Sobic004G313400--Sobic003G027000 Sobic004G313400--Sobic001G218600 Sobic004G313400--Sobic005G070301 Sobic006G215800 Sobic006G215800 Sobic004G313400--Sobic006G215800 Sobic002G151500 Sobic002G151500 Sobic004G313400--Sobic002G151500 Sobic004G313400--Sobic003G396500 Sobic009G066600 Sobic009G066600 Sobic004G313400--Sobic009G066600 Sobic003G044000 Sobic003G044000 Sobic004G313400--Sobic003G044000 Sobic001G218600--Sobic003G090000 Sobic001G218600--Sobic003G027000 Sobic001G218600--Sobic003G396500 Sobic001G218600--Sobic005G070301 Sobic001G218600--Sobic001G506400 Sobic001G218600--Sobic003G044000 Sobic001G218600--Sobic007G060100 Sobic001G218600--Sobic010G157200 Sobic001G218600--Sobic010G263400
Octagon: transcription factors


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