Gene annotation
Transcriptome id Sobic.001G158300.1
Synonym VPS2.2, Sb01g013800
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5WR95
Pfam PF03357
Panther DB PTHR10476 PTHR10476:SF8
NCBI CDD KOG3230; Vacuolar assembly/sorting protein DID4
KEGG Orthology K12191; charged multivesicular body protein 2A
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT5G44560 : SNF7 family protein
RAP-DB (Rice) LOC_Os03g43860.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017277
Brachypodium KQK14015 , PNT74392
Barley HORVU5Hr1G093260.3 , HORVU5Hr1G093260.2 , HORVU5Hr1G093260.1 , HORVU5Hr1G093260.7 , HORVU5Hr1G093260.6 , HORVU5Hr1G093260.5 , HORVU5Hr1G093260.4
Wheat TraesCS5D02G386000 , TraesCSU02G072600 , TraesCS5B02G379400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
2 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
3 Sobic.008G070700 leafbladeless1, putative, expressed -
4 Sobic.010G003300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
5 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
6 Sobic.002G027600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
7 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
8 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
9 Sobic.010G237800 ZOS1-21 - C2H2 zinc finger protein, expressed -
10 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
11 Sobic.001G540700 expressed protein -
12 Sobic.001G101900 SCP-like extracellular protein, expressed -
13 Sobic.001G101700 OsGIF1(Ortholog in rice:He et al. (2017))(PubMedID : 31659832)@GRF-interacting factor 1, putative, expressed -
14 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
15 Sobic.003G013800 expressed protein -
16 Sobic.001G493900 beta-galactosidase, putative, expressed -
17 Sobic.009G127800 BZIP protein, putative, expressed -
18 Sobic.010G212700 tetraspanin family protein, putative, expressed -
19 Sobic.001G300400 expansin precursor, putative, expressed -
20 Sobic.002G253900 growth regulator related protein, putative, expressed -


Gene co-expression network
sample Sobic001G158300 Sobic001G158300 Sobic006G272800 Sobic006G272800 Sobic001G158300--Sobic006G272800 Sobic002G284100 Sobic002G284100 Sobic001G158300--Sobic002G284100 Sobic008G070700 Sobic008G070700 Sobic001G158300--Sobic008G070700 Sobic010G003300 Sobic010G003300 Sobic001G158300--Sobic010G003300 Sobic001G468000 Sobic001G468000 Sobic001G158300--Sobic001G468000 Sobic002G027600 Sobic002G027600 Sobic001G158300--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic001G158300--Sobic004G267600 Sobic002G196500 Sobic002G196500 Sobic001G158300--Sobic002G196500 Sobic010G237800 Sobic010G237800 Sobic001G158300--Sobic010G237800 Sobic006G272800--Sobic002G284100 Sobic006G272800--Sobic002G027600 Sobic006G272800--Sobic004G267600 Sobic006G272800--Sobic008G070700 Sobic005G032600 Sobic005G032600 Sobic006G272800--Sobic005G032600 Sobic006G272800--Sobic001G468000 Sobic002G006100 Sobic002G006100 Sobic006G272800--Sobic002G006100 Sobic006G142500 Sobic006G142500 Sobic006G272800--Sobic006G142500 Sobic006G272800--Sobic001G158300 Sobic002G284100--Sobic006G272800 Sobic002G284100--Sobic004G267600 Sobic002G284100--Sobic002G027600 Sobic001G369800 Sobic001G369800 Sobic002G284100--Sobic001G369800 Sobic001G123100 Sobic001G123100 Sobic002G284100--Sobic001G123100 Sobic001G540700 Sobic001G540700 Sobic002G284100--Sobic001G540700 Sobic010G086000 Sobic010G086000 Sobic002G284100--Sobic010G086000 Sobic009G172950 Sobic009G172950 Sobic002G284100--Sobic009G172950 Sobic002G284100--Sobic006G142500 Sobic008G070700--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic008G070700--Sobic002G112000 Sobic008G070700--Sobic004G267600 Sobic001G439800 Sobic001G439800 Sobic008G070700--Sobic001G439800 Sobic010G222800 Sobic010G222800 Sobic008G070700--Sobic010G222800 Sobic010G092400 Sobic010G092400 Sobic008G070700--Sobic010G092400 Sobic002G317700 Sobic002G317700 Sobic008G070700--Sobic002G317700 Sobic001G175100 Sobic001G175100 Sobic008G070700--Sobic001G175100 Sobic003G393100 Sobic003G393100 Sobic008G070700--Sobic003G393100 Sobic001G054700 Sobic001G054700 Sobic010G003300--Sobic001G054700 Sobic003G283600 Sobic003G283600 Sobic010G003300--Sobic003G283600 Sobic006G221300 Sobic006G221300 Sobic010G003300--Sobic006G221300 Sobic010G003300--Sobic009G172950 Sobic010G003300--Sobic002G284100 Sobic009G127800 Sobic009G127800 Sobic010G003300--Sobic009G127800 Sobic010G003300--Sobic006G142500 Sobic010G003300--Sobic001G158300 Sobic009G101100 Sobic009G101100 Sobic010G003300--Sobic009G101100 Sobic006G066400 Sobic006G066400 Sobic001G468000--Sobic006G066400 Sobic010G212700 Sobic010G212700 Sobic001G468000--Sobic010G212700 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic001G468000--Sobic002G284100 Sobic001G468000--Sobic001G158300 Sobic010G180200 Sobic010G180200 Sobic001G468000--Sobic010G180200 Sobic002G302600 Sobic002G302600 Sobic001G468000--Sobic002G302600 Sobic001G171100 Sobic001G171100 Sobic001G468000--Sobic001G171100 Sobic002G027600--Sobic002G006100 Sobic002G027600--Sobic006G272800 Sobic002G027600--Sobic004G267600 Sobic002G027600--Sobic005G032600 Sobic002G027600--Sobic002G284100 Sobic002G027600--Sobic006G142500 Sobic002G027600--Sobic009G127800 Sobic003G351900 Sobic003G351900 Sobic002G027600--Sobic003G351900 Sobic001G079900 Sobic001G079900 Sobic002G027600--Sobic001G079900 Sobic001G493900 Sobic001G493900 Sobic004G267600--Sobic001G493900 Sobic004G267600--Sobic002G284100 Sobic010G129700 Sobic010G129700 Sobic004G267600--Sobic010G129700 Sobic004G267600--Sobic006G142500 Sobic004G267600--Sobic002G027600 Sobic004G267600--Sobic006G272800 Sobic002G417000 Sobic002G417000 Sobic004G267600--Sobic002G417000 Sobic004G267600--Sobic005G032600 Sobic005G062600 Sobic005G062600 Sobic004G267600--Sobic005G062600 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic002G196500--Sobic001G468000 Sobic002G196500--Sobic006G272800 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200 Sobic003G289700 Sobic003G289700 Sobic010G237800--Sobic003G289700 Sobic010G237800--Sobic008G070700 Sobic010G237800--Sobic001G158300 Sobic006G106200 Sobic006G106200 Sobic010G237800--Sobic006G106200 Sobic003G013800 Sobic003G013800 Sobic010G237800--Sobic003G013800 Sobic002G374200 Sobic002G374200 Sobic010G237800--Sobic002G374200 Sobic010G237800--Sobic010G212700 Sobic007G153700 Sobic007G153700 Sobic010G237800--Sobic007G153700 Sobic010G237800--Sobic002G196500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.