Gene annotation
Transcriptome id Sobic.004G350200.1
Synonym BTR1L, BTR1, BTR1S, Sb04g037690
Functional annotation KH domain containing protein, putative, expressed
UniProt C5XW10
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF142
NCBI CDD KOG2191; RNA-binding protein NOVA1/PASILLA and related KH domain proteins
KEGG Orthology K14944; RNA-binding protein Nova
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G04430 : binding to TOMV RNA 1L (long form)
RAP-DB (Rice) LOC_Os02g57640.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032758 , Zm00025a022644
Brachypodium KQK01444
Barley -
Wheat TraesCS6B02G444800 , TraesCS6A02G402400 , TraesCS6A02G402400
Populus -


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cDNA sequences
Sobic.004G350200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G038900 expressed protein -
2 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
3 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
4 Sobic.007G036800 xylosyltransferase, putative, expressed -
5 Sobic.004G063300 expressed protein -
6 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
7 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
8 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
9 Sobic.001G229300 expressed protein -
10 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
11 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
12 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
13 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
14 Sobic.003G041400 aminoacyl-tRNA synthetase, putative, expressed -
15 Sobic.003G221500 CENP-C1, putative, expressed -
16 Sobic.010G103500 ATMAP70 protein, putative, expressed -
17 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
18 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
19 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
20 Sobic.002G315100 expressed protein K15083: DNA repair protein RAD16


Gene co-expression network
sample Sobic004G350200 Sobic004G350200 Sobic010G038900 Sobic010G038900 Sobic004G350200--Sobic010G038900 Sobic004G000400 Sobic004G000400 Sobic004G350200--Sobic004G000400 Sobic005G160200 Sobic005G160200 Sobic004G350200--Sobic005G160200 Sobic007G036800 Sobic007G036800 Sobic004G350200--Sobic007G036800 Sobic004G063300 Sobic004G063300 Sobic004G350200--Sobic004G063300 Sobic001G123600 Sobic001G123600 Sobic004G350200--Sobic001G123600 Sobic009G063800 Sobic009G063800 Sobic004G350200--Sobic009G063800 Sobic006G106600 Sobic006G106600 Sobic004G350200--Sobic006G106600 Sobic001G229300 Sobic001G229300 Sobic004G350200--Sobic001G229300 Sobic006G184200 Sobic006G184200 Sobic010G038900--Sobic006G184200 Sobic002G066800 Sobic002G066800 Sobic010G038900--Sobic002G066800 Sobic010G038900--Sobic004G350200 Sobic008G087200 Sobic008G087200 Sobic010G038900--Sobic008G087200 Sobic010G257500 Sobic010G257500 Sobic010G038900--Sobic010G257500 Sobic010G018900 Sobic010G018900 Sobic010G038900--Sobic010G018900 Sobic010G038900--Sobic005G160200 Sobic010G038900--Sobic004G063300 Sobic010G009600 Sobic010G009600 Sobic010G038900--Sobic010G009600 Sobic004G000400--Sobic006G106600 Sobic002G173400 Sobic002G173400 Sobic004G000400--Sobic002G173400 Sobic007G186400 Sobic007G186400 Sobic004G000400--Sobic007G186400 Sobic009G120400 Sobic009G120400 Sobic004G000400--Sobic009G120400 Sobic004G000400--Sobic004G350200 Sobic002G271400 Sobic002G271400 Sobic004G000400--Sobic002G271400 Sobic004G215600 Sobic004G215600 Sobic004G000400--Sobic004G215600 Sobic002G123600 Sobic002G123600 Sobic004G000400--Sobic002G123600 Sobic004G000400--Sobic010G257500 Sobic004G014100 Sobic004G014100 Sobic005G160200--Sobic004G014100 Sobic003G411700 Sobic003G411700 Sobic005G160200--Sobic003G411700 Sobic003G343200 Sobic003G343200 Sobic005G160200--Sobic003G343200 Sobic006G091850 Sobic006G091850 Sobic005G160200--Sobic006G091850 Sobic002G315100 Sobic002G315100 Sobic005G160200--Sobic002G315100 Sobic005G160200--Sobic010G038900 Sobic005G160200--Sobic010G257500 Sobic001G534400 Sobic001G534400 Sobic005G160200--Sobic001G534400 Sobic005G160200--Sobic004G350200 Sobic004G129500 Sobic004G129500 Sobic007G036800--Sobic004G129500 Sobic010G103500 Sobic010G103500 Sobic007G036800--Sobic010G103500 Sobic004G145600 Sobic004G145600 Sobic007G036800--Sobic004G145600 Sobic008G112100 Sobic008G112100 Sobic007G036800--Sobic008G112100 Sobic010G059700 Sobic010G059700 Sobic007G036800--Sobic010G059700 Sobic007G010200 Sobic007G010200 Sobic007G036800--Sobic007G010200 Sobic007G036800--Sobic004G350200 Sobic007G036800--Sobic002G123600 Sobic004G256300 Sobic004G256300 Sobic007G036800--Sobic004G256300 Sobic004G063300--Sobic010G038900 Sobic009G008200 Sobic009G008200 Sobic004G063300--Sobic009G008200 Sobic004G063300--Sobic002G066800 Sobic004G063300--Sobic004G350200 Sobic002G141200 Sobic002G141200 Sobic004G063300--Sobic002G141200 Sobic007G034200 Sobic007G034200 Sobic004G063300--Sobic007G034200 Sobic002G322400 Sobic002G322400 Sobic004G063300--Sobic002G322400 Sobic001G051400 Sobic001G051400 Sobic004G063300--Sobic001G051400 Sobic002G274700 Sobic002G274700 Sobic004G063300--Sobic002G274700 Sobic006G191200 Sobic006G191200 Sobic001G123600--Sobic006G191200 Sobic001G123600--Sobic001G229300 Sobic003G360300 Sobic003G360300 Sobic001G123600--Sobic003G360300 Sobic001G123600--Sobic007G034200 Sobic002G386900 Sobic002G386900 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic001G123600--Sobic009G120400 Sobic003G299500 Sobic003G299500 Sobic001G123600--Sobic003G299500 Sobic003G010900 Sobic003G010900 Sobic001G123600--Sobic003G010900 Sobic002G182000 Sobic002G182000 Sobic009G063800--Sobic002G182000 Sobic010G250000 Sobic010G250000 Sobic009G063800--Sobic010G250000 Sobic007G146600 Sobic007G146600 Sobic009G063800--Sobic007G146600 Sobic001G309200 Sobic001G309200 Sobic009G063800--Sobic001G309200 Sobic009G063800--Sobic002G322400 Sobic009G063800--Sobic010G018900 Sobic001G203600 Sobic001G203600 Sobic009G063800--Sobic001G203600 Sobic002G348400 Sobic002G348400 Sobic009G063800--Sobic002G348400 Sobic008G072500 Sobic008G072500 Sobic009G063800--Sobic008G072500 Sobic006G106600--Sobic004G000400 Sobic006G106600--Sobic002G173400 Sobic006G106600--Sobic007G186400 Sobic006G106600--Sobic004G215600 Sobic006G106600--Sobic001G229300 Sobic001G191900 Sobic001G191900 Sobic006G106600--Sobic001G191900 Sobic006G106600--Sobic002G271400 Sobic010G030000 Sobic010G030000 Sobic006G106600--Sobic010G030000 Sobic008G131900 Sobic008G131900 Sobic006G106600--Sobic008G131900 Sobic001G229300--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic001G229300--Sobic003G129300 Sobic004G354100 Sobic004G354100 Sobic001G229300--Sobic004G354100 Sobic001G229300--Sobic004G256300 Sobic001G229300--Sobic003G010900 Sobic001G229300--Sobic002G066800 Sobic003G222700 Sobic003G222700 Sobic001G229300--Sobic003G222700 Sobic002G142700 Sobic002G142700 Sobic001G229300--Sobic002G142700 Sobic001G229300--Sobic006G106600
Octagon: transcription factors


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