Gene annotation
Transcriptome id Sobic.004G063300.3,Sobic.004G063300.2,Sobic.004G063300.1
Synonym Sb04g005260
Functional annotation expressed protein
UniProt A0A194YN06 , A0A194YN17
Pfam -
Panther DB PTHR36027 PTHR36027:SF1 PTHR36027
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46980 : -
RAP-DB (Rice) LOC_Os10g26560.1 : expressed protein
MaizeGDB (Corn) Zm00025a019185 , Zm00025a019189
Brachypodium -
Barley -
Wheat TraesCS2B02G024400 , TraesCS5B02G045200 , TraesCS2D02G017900 , TraesCS2D02G017900 , TraesCS2D02G017900 , TraesCS5B02G098800 , TraesCS5A02G042200 , TraesCS5D02G050300 , TraesCS2A02G016400 , TraesCS5D02G105000 , TraesCS2B02G024400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G038900 expressed protein -
2 Sobic.009G008200 STE_PAK_Ste20++TranslationKinase_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
3 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
4 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
5 Sobic.002G141200 expressed protein -
6 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
7 Sobic.002G322400 OsPDIL5-4 protein disulfide isomerase PDIL5-4, expressed -
8 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
9 Sobic.002G274700 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
10 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
11 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
12 Sobic.004G204000 B3 DNA binding domain containing protein, expressed -
13 Sobic.001G229300 expressed protein -
14 Sobic.003G004600 expressed protein -
15 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
16 Sobic.003G216600 BAH domain containing protein, expressed -
17 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
18 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
19 Sobic.002G239400 OsFBX338 - F-box domain containing protein, expressed -
20 Sobic.008G087200 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C


Gene co-expression network
sample Sobic004G063300 Sobic004G063300 Sobic010G038900 Sobic010G038900 Sobic004G063300--Sobic010G038900 Sobic009G008200 Sobic009G008200 Sobic004G063300--Sobic009G008200 Sobic002G066800 Sobic002G066800 Sobic004G063300--Sobic002G066800 Sobic004G350200 Sobic004G350200 Sobic004G063300--Sobic004G350200 Sobic002G141200 Sobic002G141200 Sobic004G063300--Sobic002G141200 Sobic007G034200 Sobic007G034200 Sobic004G063300--Sobic007G034200 Sobic002G322400 Sobic002G322400 Sobic004G063300--Sobic002G322400 Sobic001G051400 Sobic001G051400 Sobic004G063300--Sobic001G051400 Sobic002G274700 Sobic002G274700 Sobic004G063300--Sobic002G274700 Sobic006G184200 Sobic006G184200 Sobic010G038900--Sobic006G184200 Sobic010G038900--Sobic002G066800 Sobic010G038900--Sobic004G350200 Sobic008G087200 Sobic008G087200 Sobic010G038900--Sobic008G087200 Sobic010G257500 Sobic010G257500 Sobic010G038900--Sobic010G257500 Sobic010G018900 Sobic010G018900 Sobic010G038900--Sobic010G018900 Sobic005G160200 Sobic005G160200 Sobic010G038900--Sobic005G160200 Sobic010G038900--Sobic004G063300 Sobic010G009600 Sobic010G009600 Sobic010G038900--Sobic010G009600 Sobic002G296400 Sobic002G296400 Sobic009G008200--Sobic002G296400 Sobic009G008200--Sobic004G063300 Sobic002G076500 Sobic002G076500 Sobic009G008200--Sobic002G076500 Sobic006G210700 Sobic006G210700 Sobic009G008200--Sobic006G210700 Sobic009G008200--Sobic002G066800 Sobic009G008200--Sobic002G141200 Sobic001G097900 Sobic001G097900 Sobic009G008200--Sobic001G097900 Sobic009G008200--Sobic001G051400 Sobic003G023200 Sobic003G023200 Sobic009G008200--Sobic003G023200 Sobic002G066800--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic002G066800--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic002G066800--Sobic002G078100 Sobic003G393200 Sobic003G393200 Sobic002G066800--Sobic003G393200 Sobic002G066800--Sobic010G038900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic006G191200 Sobic006G191200 Sobic002G066800--Sobic006G191200 Sobic002G066800--Sobic003G023200 Sobic004G350200--Sobic010G038900 Sobic004G000400 Sobic004G000400 Sobic004G350200--Sobic004G000400 Sobic004G350200--Sobic005G160200 Sobic007G036800 Sobic007G036800 Sobic004G350200--Sobic007G036800 Sobic004G350200--Sobic004G063300 Sobic001G123600 Sobic001G123600 Sobic004G350200--Sobic001G123600 Sobic009G063800 Sobic009G063800 Sobic004G350200--Sobic009G063800 Sobic006G106600 Sobic006G106600 Sobic004G350200--Sobic006G106600 Sobic001G229300 Sobic001G229300 Sobic004G350200--Sobic001G229300 Sobic002G363800 Sobic002G363800 Sobic002G141200--Sobic002G363800 Sobic002G141200--Sobic004G063300 Sobic002G426100 Sobic002G426100 Sobic002G141200--Sobic002G426100 Sobic002G141200--Sobic009G008200 Sobic002G141200--Sobic003G023200 Sobic002G141200--Sobic002G066800 Sobic007G186400 Sobic007G186400 Sobic002G141200--Sobic007G186400 Sobic001G191900 Sobic001G191900 Sobic002G141200--Sobic001G191900 Sobic006G126800 Sobic006G126800 Sobic002G141200--Sobic006G126800 Sobic003G299500 Sobic003G299500 Sobic007G034200--Sobic003G299500 Sobic009G120400 Sobic009G120400 Sobic007G034200--Sobic009G120400 Sobic007G034200--Sobic001G051400 Sobic007G034200--Sobic001G123600 Sobic003G194800 Sobic003G194800 Sobic007G034200--Sobic003G194800 Sobic002G386900 Sobic002G386900 Sobic007G034200--Sobic002G386900 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic007G034200--Sobic006G170900 Sobic002G322400--Sobic002G274700 Sobic007G153500 Sobic007G153500 Sobic002G322400--Sobic007G153500 Sobic001G455000 Sobic001G455000 Sobic002G322400--Sobic001G455000 Sobic004G198300 Sobic004G198300 Sobic002G322400--Sobic004G198300 Sobic006G100266 Sobic006G100266 Sobic002G322400--Sobic006G100266 Sobic008G019532 Sobic008G019532 Sobic002G322400--Sobic008G019532 Sobic002G322400--Sobic005G087300 Sobic002G313100 Sobic002G313100 Sobic002G322400--Sobic002G313100 Sobic002G392400 Sobic002G392400 Sobic002G322400--Sobic002G392400 Sobic001G051400--Sobic002G066800 Sobic001G051400--Sobic007G034200 Sobic001G051400--Sobic003G393200 Sobic001G051400--Sobic003G010900 Sobic001G051400--Sobic009G120400 Sobic001G051400--Sobic006G191200 Sobic001G051400--Sobic005G087300 Sobic001G051400--Sobic002G078100 Sobic005G123400 Sobic005G123400 Sobic001G051400--Sobic005G123400 Sobic010G051800 Sobic010G051800 Sobic002G274700--Sobic010G051800 Sobic002G274700--Sobic002G322400 Sobic002G304500 Sobic002G304500 Sobic002G274700--Sobic002G304500 Sobic002G274700--Sobic008G087200 Sobic003G255700 Sobic003G255700 Sobic002G274700--Sobic003G255700 Sobic001G131900 Sobic001G131900 Sobic002G274700--Sobic001G131900 Sobic002G274700--Sobic010G009600 Sobic003G293400 Sobic003G293400 Sobic002G274700--Sobic003G293400 Sobic002G274700--Sobic006G100266
Octagon: transcription factors


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