Gene annotation
Transcriptome id Sobic.004G204000.1,Sobic.004G204000.2
Synonym
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt A0A1Z5RNC3 , A0A194YQQ0
Pfam PF02362
Panther DB PTHR31391 PTHR31391:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G18960 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os02g38470.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021291
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G313100 STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08838: serine/threonine-protein kinase 24/25/MST4
2 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
3 Sobic.006G119900 zinc finger, ZZ type family protein, expressed K17987: next to BRCA1 gene 1 protein
4 Sobic.008G085950 - -
5 Sobic.001G308500 glycosyltransferase family protein 1, putative, expressed -
6 Sobic.002G151500 R-interacting factor 1, putative, expressed -
7 Sobic.009G054400 ECT protein, putative, expressed -
8 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
9 Sobic.005G060100 growth regulator related protein, putative, expressed -
10 Sobic.006G189000 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
11 Sobic.003G004800 ATP binding protein, putative, expressed -
12 Sobic.001G305900 GTP binding protein, putative, expressed -
13 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
14 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
15 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
16 Sobic.005G123400 expressed protein -
17 Sobic.004G063300 expressed protein -
18 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
20 Sobic.001G433600 - -


Gene co-expression network
sample Sobic004G204000 Sobic004G204000 Sobic002G313100 Sobic002G313100 Sobic004G204000--Sobic002G313100 Sobic001G076600 Sobic001G076600 Sobic004G204000--Sobic001G076600 Sobic006G119900 Sobic006G119900 Sobic004G204000--Sobic006G119900 Sobic008G085950 Sobic008G085950 Sobic004G204000--Sobic008G085950 Sobic001G308500 Sobic001G308500 Sobic004G204000--Sobic001G308500 Sobic002G151500 Sobic002G151500 Sobic004G204000--Sobic002G151500 Sobic009G054400 Sobic009G054400 Sobic004G204000--Sobic009G054400 Sobic007G105700 Sobic007G105700 Sobic004G204000--Sobic007G105700 Sobic005G060100 Sobic005G060100 Sobic004G204000--Sobic005G060100 Sobic002G392400 Sobic002G392400 Sobic002G313100--Sobic002G392400 Sobic006G232800 Sobic006G232800 Sobic002G313100--Sobic006G232800 Sobic002G313100--Sobic007G105700 Sobic003G004800 Sobic003G004800 Sobic002G313100--Sobic003G004800 Sobic007G086600 Sobic007G086600 Sobic002G313100--Sobic007G086600 Sobic003G293400 Sobic003G293400 Sobic002G313100--Sobic003G293400 Sobic005G087300 Sobic005G087300 Sobic002G313100--Sobic005G087300 Sobic001G280500 Sobic001G280500 Sobic002G313100--Sobic001G280500 Sobic002G313100--Sobic001G076600 Sobic003G352900 Sobic003G352900 Sobic001G076600--Sobic003G352900 Sobic007G144100 Sobic007G144100 Sobic001G076600--Sobic007G144100 Sobic008G166100 Sobic008G166100 Sobic001G076600--Sobic008G166100 Sobic004G038400 Sobic004G038400 Sobic001G076600--Sobic004G038400 Sobic002G299500 Sobic002G299500 Sobic001G076600--Sobic002G299500 Sobic004G045632 Sobic004G045632 Sobic001G076600--Sobic004G045632 Sobic003G258100 Sobic003G258100 Sobic001G076600--Sobic003G258100 Sobic005G173700 Sobic005G173700 Sobic001G076600--Sobic005G173700 Sobic003G376900 Sobic003G376900 Sobic001G076600--Sobic003G376900 Sobic006G119900--Sobic007G105700 Sobic006G119900--Sobic001G076600 Sobic006G189000 Sobic006G189000 Sobic006G119900--Sobic006G189000 Sobic006G119900--Sobic005G060100 Sobic001G385300 Sobic001G385300 Sobic006G119900--Sobic001G385300 Sobic010G274800 Sobic010G274800 Sobic006G119900--Sobic010G274800 Sobic006G119900--Sobic008G085950 Sobic006G119900--Sobic003G004800 Sobic006G156400 Sobic006G156400 Sobic006G119900--Sobic006G156400 Sobic008G085950--Sobic001G308500 Sobic007G043700 Sobic007G043700 Sobic008G085950--Sobic007G043700 Sobic007G102000 Sobic007G102000 Sobic008G085950--Sobic007G102000 Sobic008G085950--Sobic007G105700 Sobic003G194800 Sobic003G194800 Sobic008G085950--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic008G085950--Sobic008G047500 Sobic008G085950--Sobic001G385300 Sobic001G327100 Sobic001G327100 Sobic008G085950--Sobic001G327100 Sobic008G085950--Sobic005G060100 Sobic006G265800 Sobic006G265800 Sobic001G308500--Sobic006G265800 Sobic001G308500--Sobic008G085950 Sobic001G308500--Sobic001G385300 Sobic009G201000 Sobic009G201000 Sobic001G308500--Sobic009G201000 Sobic001G308500--Sobic003G352900 Sobic001G308500--Sobic010G274800 Sobic009G163100 Sobic009G163100 Sobic001G308500--Sobic009G163100 Sobic004G298600 Sobic004G298600 Sobic001G308500--Sobic004G298600 Sobic001G308500--Sobic008G166100 Sobic001G131900 Sobic001G131900 Sobic002G151500--Sobic001G131900 Sobic004G313400 Sobic004G313400 Sobic002G151500--Sobic004G313400 Sobic010G009700 Sobic010G009700 Sobic002G151500--Sobic010G009700 Sobic003G377300 Sobic003G377300 Sobic002G151500--Sobic003G377300 Sobic002G151500--Sobic003G352900 Sobic002G151500--Sobic007G144100 Sobic002G151500--Sobic003G258100 Sobic005G045800 Sobic005G045800 Sobic002G151500--Sobic005G045800 Sobic002G151500--Sobic004G298600 Sobic001G433600 Sobic001G433600 Sobic009G054400--Sobic001G433600 Sobic009G054400--Sobic010G009700 Sobic009G054400--Sobic007G105700 Sobic009G054400--Sobic002G392400 Sobic002G241100 Sobic002G241100 Sobic009G054400--Sobic002G241100 Sobic002G239400 Sobic002G239400 Sobic009G054400--Sobic002G239400 Sobic009G054400--Sobic005G060100 Sobic009G054400--Sobic008G047500 Sobic003G200000 Sobic003G200000 Sobic009G054400--Sobic003G200000 Sobic007G105700--Sobic002G392400 Sobic002G308000 Sobic002G308000 Sobic007G105700--Sobic002G308000 Sobic007G105700--Sobic005G060100 Sobic007G105700--Sobic001G433600 Sobic007G105700--Sobic001G385300 Sobic007G105700--Sobic001G308500 Sobic007G105700--Sobic004G298600 Sobic007G105700--Sobic008G085950 Sobic001G117900 Sobic001G117900 Sobic007G105700--Sobic001G117900 Sobic005G060100--Sobic007G105700 Sobic007G102300 Sobic007G102300 Sobic005G060100--Sobic007G102300 Sobic005G060100--Sobic001G385300 Sobic003G216600 Sobic003G216600 Sobic005G060100--Sobic003G216600 Sobic005G060100--Sobic001G433600 Sobic005G060100--Sobic004G298600 Sobic005G060100--Sobic001G117900 Sobic005G060100--Sobic003G352900 Sobic005G060100--Sobic001G131900
Octagon: transcription factors


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