Gene annotation
Transcriptome id Sobic.003G320100.1
Synonym Sb03g036700
Functional annotation pentatricopeptide containing protein, putative, expressed
UniProt C5XLS7
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF893
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55890 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g57630.3 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039876
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
2 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
3 Sobic.009G138300 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
4 Sobic.010G257500 expressed protein -
5 Sobic.003G216600 BAH domain containing protein, expressed -
6 Sobic.006G106600 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
7 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
8 Sobic.010G222800 expressed protein -
9 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
10 Sobic.003G013800 expressed protein -
11 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
12 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
13 Sobic.006G127200 kelch repeat protein, putative, expressed -
14 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
15 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
16 Sobic.004G350200 KH domain containing protein, putative, expressed K14944: RNA-binding protein Nova
17 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
18 Sobic.008G180200 expressed protein -
19 Sobic.008G131900 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@resistance protein LR10, putative, expressed -
20 Sobic.005G172700 expressed protein -


Gene co-expression network
sample Sobic003G320100 Sobic003G320100 Sobic003G289700 Sobic003G289700 Sobic003G320100--Sobic003G289700 Sobic010G030000 Sobic010G030000 Sobic003G320100--Sobic010G030000 Sobic009G138300 Sobic009G138300 Sobic003G320100--Sobic009G138300 Sobic010G257500 Sobic010G257500 Sobic003G320100--Sobic010G257500 Sobic003G216600 Sobic003G216600 Sobic003G320100--Sobic003G216600 Sobic006G106600 Sobic006G106600 Sobic003G320100--Sobic006G106600 Sobic003G343200 Sobic003G343200 Sobic003G320100--Sobic003G343200 Sobic010G222800 Sobic010G222800 Sobic003G320100--Sobic010G222800 Sobic001G486600 Sobic001G486600 Sobic003G320100--Sobic001G486600 Sobic005G172700 Sobic005G172700 Sobic003G289700--Sobic005G172700 Sobic003G289700--Sobic003G343200 Sobic003G289700--Sobic010G222800 Sobic010G237800 Sobic010G237800 Sobic003G289700--Sobic010G237800 Sobic003G289700--Sobic003G320100 Sobic006G106200 Sobic006G106200 Sobic003G289700--Sobic006G106200 Sobic003G289700--Sobic009G138300 Sobic010G243100 Sobic010G243100 Sobic003G289700--Sobic010G243100 Sobic005G160200 Sobic005G160200 Sobic003G289700--Sobic005G160200 Sobic010G038200 Sobic010G038200 Sobic010G030000--Sobic010G038200 Sobic009G136000 Sobic009G136000 Sobic010G030000--Sobic009G136000 Sobic008G131900 Sobic008G131900 Sobic010G030000--Sobic008G131900 Sobic010G009700 Sobic010G009700 Sobic010G030000--Sobic010G009700 Sobic010G030000--Sobic010G243100 Sobic005G210500 Sobic005G210500 Sobic010G030000--Sobic005G210500 Sobic010G030000--Sobic003G216600 Sobic010G030000--Sobic001G486600 Sobic010G030000--Sobic010G222800 Sobic009G138300--Sobic010G243100 Sobic004G328300 Sobic004G328300 Sobic009G138300--Sobic004G328300 Sobic009G138300--Sobic010G009700 Sobic009G138300--Sobic003G289700 Sobic006G236800 Sobic006G236800 Sobic009G138300--Sobic006G236800 Sobic009G138300--Sobic009G136000 Sobic009G138300--Sobic003G320100 Sobic001G248400 Sobic001G248400 Sobic009G138300--Sobic001G248400 Sobic009G138300--Sobic010G030000 Sobic010G009600 Sobic010G009600 Sobic010G257500--Sobic010G009600 Sobic010G257500--Sobic003G343200 Sobic001G534400 Sobic001G534400 Sobic010G257500--Sobic001G534400 Sobic006G127200 Sobic006G127200 Sobic010G257500--Sobic006G127200 Sobic010G013400 Sobic010G013400 Sobic010G257500--Sobic010G013400 Sobic010G018900 Sobic010G018900 Sobic010G257500--Sobic010G018900 Sobic002G271400 Sobic002G271400 Sobic010G257500--Sobic002G271400 Sobic004G014100 Sobic004G014100 Sobic010G257500--Sobic004G014100 Sobic010G038900 Sobic010G038900 Sobic010G257500--Sobic010G038900 Sobic005G060100 Sobic005G060100 Sobic003G216600--Sobic005G060100 Sobic007G102300 Sobic007G102300 Sobic003G216600--Sobic007G102300 Sobic003G216600--Sobic010G038200 Sobic003G216600--Sobic010G009700 Sobic004G298600 Sobic004G298600 Sobic003G216600--Sobic004G298600 Sobic003G216600--Sobic001G248400 Sobic009G214500 Sobic009G214500 Sobic003G216600--Sobic009G214500 Sobic003G216600--Sobic010G030000 Sobic008G047500 Sobic008G047500 Sobic003G216600--Sobic008G047500 Sobic004G000400 Sobic004G000400 Sobic006G106600--Sobic004G000400 Sobic002G173400 Sobic002G173400 Sobic006G106600--Sobic002G173400 Sobic007G186400 Sobic007G186400 Sobic006G106600--Sobic007G186400 Sobic004G215600 Sobic004G215600 Sobic006G106600--Sobic004G215600 Sobic001G229300 Sobic001G229300 Sobic006G106600--Sobic001G229300 Sobic001G191900 Sobic001G191900 Sobic006G106600--Sobic001G191900 Sobic006G106600--Sobic002G271400 Sobic006G106600--Sobic010G030000 Sobic006G106600--Sobic008G131900 Sobic003G343200--Sobic010G222800 Sobic003G343200--Sobic010G257500 Sobic003G343200--Sobic002G271400 Sobic003G343200--Sobic001G534400 Sobic003G411700 Sobic003G411700 Sobic003G343200--Sobic003G411700 Sobic003G343200--Sobic004G014100 Sobic003G343200--Sobic003G289700 Sobic004G306100 Sobic004G306100 Sobic003G343200--Sobic004G306100 Sobic010G024000 Sobic010G024000 Sobic003G343200--Sobic010G024000 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic010G222800--Sobic003G411700 Sobic002G112000 Sobic002G112000 Sobic010G222800--Sobic002G112000 Sobic008G070700 Sobic008G070700 Sobic010G222800--Sobic008G070700 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic010G222800--Sobic008G131900 Sobic001G486600--Sobic005G210500 Sobic001G486600--Sobic008G131900 Sobic001G486600--Sobic010G038200 Sobic001G486600--Sobic002G173400 Sobic006G119300 Sobic006G119300 Sobic001G486600--Sobic006G119300 Sobic001G486600--Sobic008G047500 Sobic001G486600--Sobic010G030000 Sobic010G252200 Sobic010G252200 Sobic001G486600--Sobic010G252200 Sobic003G204100 Sobic003G204100 Sobic001G486600--Sobic003G204100
Octagon: transcription factors


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