Gene annotation
Transcriptome id Sobic.003G007200.1
Synonym 1, Sb03g000790, TIP4
Functional annotation aquaporin protein, putative, expressed
UniProt C5XJN1
Pfam PF00230
Panther DB PTHR19139 PTHR19139:SF165
NCBI CDD KOG0223; Aquaporin (major intrinsic protein family)
KEGG Orthology K09873; aquaporin TIP
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT2G25810 : tonoplast intrinsic protein 4;1
RAP-DB (Rice) LOC_Os01g13120.1 : aquaporin protein, putative, expressed
MaizeGDB (Corn) Zm00025a022816
Brachypodium KQK03428
Barley HORVU3Hr1G031620.1 , HORVU3Hr1G031620.3 , HORVU3Hr1G031620.2 , HORVU3Hr1G031620.5 , HORVU3Hr1G031620.4
Wheat TraesCS3B02G182200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
2 Sobic.001G128200 RNA recognition motif containing protein, putative, expressed -
3 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
4 Sobic.010G222800 expressed protein -
5 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
6 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
7 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
8 Sobic.007G017100 - -
9 Sobic.001G425200 expressed protein -
10 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
11 Sobic.001G534400 - -
12 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
13 Sobic.008G070700 leafbladeless1, putative, expressed -
14 Sobic.004G041100 ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7
15 Sobic.010G212700 tetraspanin family protein, putative, expressed -
16 Sobic.001G033300 expansin precursor, putative, expressed -
17 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
18 Sobic.004G220200 expressed protein -
19 Sobic.007G127950 - -
20 Sobic.003G091200 seven in absentia protein family domain containing protein, expressed -


Gene co-expression network
sample Sobic003G007200 Sobic003G007200 Sobic003G343200 Sobic003G343200 Sobic003G007200--Sobic003G343200 Sobic001G128200 Sobic001G128200 Sobic003G007200--Sobic001G128200 Sobic006G236800 Sobic006G236800 Sobic003G007200--Sobic006G236800 Sobic010G222800 Sobic010G222800 Sobic003G007200--Sobic010G222800 Sobic003G411700 Sobic003G411700 Sobic003G007200--Sobic003G411700 Sobic002G374200 Sobic002G374200 Sobic003G007200--Sobic002G374200 Sobic006G272800 Sobic006G272800 Sobic003G007200--Sobic006G272800 Sobic007G017100 Sobic007G017100 Sobic003G007200--Sobic007G017100 Sobic001G425200 Sobic001G425200 Sobic003G007200--Sobic001G425200 Sobic003G343200--Sobic010G222800 Sobic010G257500 Sobic010G257500 Sobic003G343200--Sobic010G257500 Sobic002G271400 Sobic002G271400 Sobic003G343200--Sobic002G271400 Sobic001G534400 Sobic001G534400 Sobic003G343200--Sobic001G534400 Sobic003G343200--Sobic003G411700 Sobic004G014100 Sobic004G014100 Sobic003G343200--Sobic004G014100 Sobic003G289700 Sobic003G289700 Sobic003G343200--Sobic003G289700 Sobic004G306100 Sobic004G306100 Sobic003G343200--Sobic004G306100 Sobic010G024000 Sobic010G024000 Sobic003G343200--Sobic010G024000 Sobic001G128200--Sobic003G007200 Sobic008G155900 Sobic008G155900 Sobic001G128200--Sobic008G155900 Sobic001G128200--Sobic007G017100 Sobic001G128200--Sobic003G343200 Sobic001G128200--Sobic001G534400 Sobic006G020000 Sobic006G020000 Sobic001G128200--Sobic006G020000 Sobic001G128200--Sobic010G024000 Sobic001G033300 Sobic001G033300 Sobic001G128200--Sobic001G033300 Sobic002G052800 Sobic002G052800 Sobic001G128200--Sobic002G052800 Sobic001G025900 Sobic001G025900 Sobic006G236800--Sobic001G025900 Sobic004G328300 Sobic004G328300 Sobic006G236800--Sobic004G328300 Sobic002G113400 Sobic002G113400 Sobic006G236800--Sobic002G113400 Sobic001G300400 Sobic001G300400 Sobic006G236800--Sobic001G300400 Sobic003G297200 Sobic003G297200 Sobic006G236800--Sobic003G297200 Sobic006G236800--Sobic002G271400 Sobic007G084200 Sobic007G084200 Sobic006G236800--Sobic007G084200 Sobic001G521100 Sobic001G521100 Sobic006G236800--Sobic001G521100 Sobic009G138300 Sobic009G138300 Sobic006G236800--Sobic009G138300 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic010G222800--Sobic003G411700 Sobic002G112000 Sobic002G112000 Sobic010G222800--Sobic002G112000 Sobic008G070700 Sobic008G070700 Sobic010G222800--Sobic008G070700 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic008G131900 Sobic008G131900 Sobic010G222800--Sobic008G131900 Sobic003G411700--Sobic010G222800 Sobic003G411700--Sobic004G306100 Sobic003G411700--Sobic002G271400 Sobic010G103500 Sobic010G103500 Sobic003G411700--Sobic010G103500 Sobic003G411700--Sobic001G425200 Sobic003G411700--Sobic003G343200 Sobic001G212600 Sobic001G212600 Sobic003G411700--Sobic001G212600 Sobic003G411700--Sobic010G024000 Sobic005G160200 Sobic005G160200 Sobic003G411700--Sobic005G160200 Sobic010G212700 Sobic010G212700 Sobic002G374200--Sobic010G212700 Sobic001G500500 Sobic001G500500 Sobic002G374200--Sobic001G500500 Sobic010G237800 Sobic010G237800 Sobic002G374200--Sobic010G237800 Sobic002G374200--Sobic003G007200 Sobic007G153700 Sobic007G153700 Sobic002G374200--Sobic007G153700 Sobic002G374200--Sobic005G160200 Sobic009G232500 Sobic009G232500 Sobic002G374200--Sobic009G232500 Sobic003G410200 Sobic003G410200 Sobic002G374200--Sobic003G410200 Sobic002G196500 Sobic002G196500 Sobic002G374200--Sobic002G196500 Sobic002G284100 Sobic002G284100 Sobic006G272800--Sobic002G284100 Sobic002G027600 Sobic002G027600 Sobic006G272800--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic006G272800--Sobic004G267600 Sobic006G272800--Sobic008G070700 Sobic005G032600 Sobic005G032600 Sobic006G272800--Sobic005G032600 Sobic001G468000 Sobic001G468000 Sobic006G272800--Sobic001G468000 Sobic002G006100 Sobic002G006100 Sobic006G272800--Sobic002G006100 Sobic006G142500 Sobic006G142500 Sobic006G272800--Sobic006G142500 Sobic001G158300 Sobic001G158300 Sobic006G272800--Sobic001G158300 Sobic003G084100 Sobic003G084100 Sobic007G017100--Sobic003G084100 Sobic002G335900 Sobic002G335900 Sobic007G017100--Sobic002G335900 Sobic001G101900 Sobic001G101900 Sobic007G017100--Sobic001G101900 Sobic003G010700 Sobic003G010700 Sobic007G017100--Sobic003G010700 Sobic008G008100 Sobic008G008100 Sobic007G017100--Sobic008G008100 Sobic007G017100--Sobic006G236800 Sobic010G087700 Sobic010G087700 Sobic007G017100--Sobic010G087700 Sobic007G017100--Sobic001G128200 Sobic002G404300 Sobic002G404300 Sobic007G017100--Sobic002G404300 Sobic001G425200--Sobic003G411700 Sobic004G041100 Sobic004G041100 Sobic001G425200--Sobic004G041100 Sobic001G425200--Sobic010G103500 Sobic001G425200--Sobic001G212600 Sobic001G425200--Sobic002G271400 Sobic001G425200--Sobic004G306100 Sobic003G336900 Sobic003G336900 Sobic001G425200--Sobic003G336900 Sobic001G425200--Sobic005G160200 Sobic003G298900 Sobic003G298900 Sobic001G425200--Sobic003G298900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.