Gene annotation
Transcriptome id Sobic.001G128200.1
Synonym Sb01g011240, ATRZ-1A
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WNX0
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G26420 : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
RAP-DB (Rice) LOC_Os05g13650.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G007200 aquaporin protein, putative, expressed K09873: aquaporin TIP
2 Sobic.008G155900 ankyrin-1, putative, expressed -
3 Sobic.007G017100 - -
4 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
5 Sobic.001G534400 - -
6 Sobic.006G020000 expressed protein K06947: GRC3, polynucleotide 5'-hydroxyl-kinase GRC3/NOL9
7 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
8 Sobic.001G033300 expansin precursor, putative, expressed -
9 Sobic.002G052800 FAR1 family protein, expressed -
10 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
11 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
12 Sobic.002G151500 R-interacting factor 1, putative, expressed -
13 Sobic.010G222800 expressed protein -
14 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
15 Sobic.007G127950 - -
16 Sobic.004G102200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
17 Sobic.009G084700 - -
18 Sobic.006G270500 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
20 Sobic.008G140600 targeting protein for Xklp2 containing protein, expressed -


Gene co-expression network
sample Sobic001G128200 Sobic001G128200 Sobic003G007200 Sobic003G007200 Sobic001G128200--Sobic003G007200 Sobic008G155900 Sobic008G155900 Sobic001G128200--Sobic008G155900 Sobic007G017100 Sobic007G017100 Sobic001G128200--Sobic007G017100 Sobic003G343200 Sobic003G343200 Sobic001G128200--Sobic003G343200 Sobic001G534400 Sobic001G534400 Sobic001G128200--Sobic001G534400 Sobic006G020000 Sobic006G020000 Sobic001G128200--Sobic006G020000 Sobic010G024000 Sobic010G024000 Sobic001G128200--Sobic010G024000 Sobic001G033300 Sobic001G033300 Sobic001G128200--Sobic001G033300 Sobic002G052800 Sobic002G052800 Sobic001G128200--Sobic002G052800 Sobic003G007200--Sobic003G343200 Sobic003G007200--Sobic001G128200 Sobic006G236800 Sobic006G236800 Sobic003G007200--Sobic006G236800 Sobic010G222800 Sobic010G222800 Sobic003G007200--Sobic010G222800 Sobic003G411700 Sobic003G411700 Sobic003G007200--Sobic003G411700 Sobic002G374200 Sobic002G374200 Sobic003G007200--Sobic002G374200 Sobic006G272800 Sobic006G272800 Sobic003G007200--Sobic006G272800 Sobic003G007200--Sobic007G017100 Sobic001G425200 Sobic001G425200 Sobic003G007200--Sobic001G425200 Sobic003G298700 Sobic003G298700 Sobic008G155900--Sobic003G298700 Sobic008G008100 Sobic008G008100 Sobic008G155900--Sobic008G008100 Sobic002G248300 Sobic002G248300 Sobic008G155900--Sobic002G248300 Sobic008G155900--Sobic001G128200 Sobic006G005900 Sobic006G005900 Sobic008G155900--Sobic006G005900 Sobic001G472200 Sobic001G472200 Sobic008G155900--Sobic001G472200 Sobic004G102200 Sobic004G102200 Sobic008G155900--Sobic004G102200 Sobic005G006500 Sobic005G006500 Sobic008G155900--Sobic005G006500 Sobic004G274600 Sobic004G274600 Sobic008G155900--Sobic004G274600 Sobic003G084100 Sobic003G084100 Sobic007G017100--Sobic003G084100 Sobic002G335900 Sobic002G335900 Sobic007G017100--Sobic002G335900 Sobic001G101900 Sobic001G101900 Sobic007G017100--Sobic001G101900 Sobic003G010700 Sobic003G010700 Sobic007G017100--Sobic003G010700 Sobic007G017100--Sobic008G008100 Sobic007G017100--Sobic006G236800 Sobic010G087700 Sobic010G087700 Sobic007G017100--Sobic010G087700 Sobic007G017100--Sobic001G128200 Sobic002G404300 Sobic002G404300 Sobic007G017100--Sobic002G404300 Sobic003G343200--Sobic010G222800 Sobic010G257500 Sobic010G257500 Sobic003G343200--Sobic010G257500 Sobic002G271400 Sobic002G271400 Sobic003G343200--Sobic002G271400 Sobic003G343200--Sobic001G534400 Sobic003G343200--Sobic003G411700 Sobic004G014100 Sobic004G014100 Sobic003G343200--Sobic004G014100 Sobic003G289700 Sobic003G289700 Sobic003G343200--Sobic003G289700 Sobic004G306100 Sobic004G306100 Sobic003G343200--Sobic004G306100 Sobic003G343200--Sobic010G024000 Sobic001G534400--Sobic010G257500 Sobic001G534400--Sobic003G343200 Sobic010G009600 Sobic010G009600 Sobic001G534400--Sobic010G009600 Sobic008G087200 Sobic008G087200 Sobic001G534400--Sobic008G087200 Sobic001G534400--Sobic004G014100 Sobic005G160200 Sobic005G160200 Sobic001G534400--Sobic005G160200 Sobic006G184200 Sobic006G184200 Sobic001G534400--Sobic006G184200 Sobic008G174500 Sobic008G174500 Sobic001G534400--Sobic008G174500 Sobic001G534400--Sobic002G271400 Sobic006G020000--Sobic001G128200 Sobic001G359000 Sobic001G359000 Sobic006G020000--Sobic001G359000 Sobic009G168100 Sobic009G168100 Sobic006G020000--Sobic009G168100 Sobic002G304500 Sobic002G304500 Sobic006G020000--Sobic002G304500 Sobic001G131900 Sobic001G131900 Sobic006G020000--Sobic001G131900 Sobic009G084700 Sobic009G084700 Sobic006G020000--Sobic009G084700 Sobic002G151500 Sobic002G151500 Sobic006G020000--Sobic002G151500 Sobic008G018200 Sobic008G018200 Sobic006G020000--Sobic008G018200 Sobic006G189000 Sobic006G189000 Sobic006G020000--Sobic006G189000 Sobic010G024000--Sobic010G222800 Sobic008G131900 Sobic008G131900 Sobic010G024000--Sobic008G131900 Sobic007G076200 Sobic007G076200 Sobic010G024000--Sobic007G076200 Sobic010G024000--Sobic003G411700 Sobic010G024000--Sobic002G271400 Sobic002G173400 Sobic002G173400 Sobic010G024000--Sobic002G173400 Sobic006G193100 Sobic006G193100 Sobic010G024000--Sobic006G193100 Sobic010G024000--Sobic003G343200 Sobic010G024000--Sobic002G052800 Sobic001G033300--Sobic003G343200 Sobic007G018500 Sobic007G018500 Sobic001G033300--Sobic007G018500 Sobic001G033300--Sobic003G411700 Sobic007G072100 Sobic007G072100 Sobic001G033300--Sobic007G072100 Sobic001G033300--Sobic004G014100 Sobic001G033300--Sobic002G271400 Sobic001G033300--Sobic010G222800 Sobic001G033300--Sobic006G236800 Sobic001G033300--Sobic010G257500 Sobic010G038200 Sobic010G038200 Sobic002G052800--Sobic010G038200 Sobic010G009700 Sobic010G009700 Sobic002G052800--Sobic010G009700 Sobic009G136000 Sobic009G136000 Sobic002G052800--Sobic009G136000 Sobic002G052800--Sobic002G173400 Sobic005G060100 Sobic005G060100 Sobic002G052800--Sobic005G060100 Sobic008G140600 Sobic008G140600 Sobic002G052800--Sobic008G140600 Sobic002G052800--Sobic008G131900 Sobic003G301800 Sobic003G301800 Sobic002G052800--Sobic003G301800 Sobic002G052800--Sobic009G168100
Octagon: transcription factors


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