Gene annotation
Transcriptome id Sobic.006G020000.2,Sobic.006G020000.4,Sobic.006G020000.3
Synonym
Functional annotation expressed protein
UniProt A0A1Z5RC52 , A0A1Z5RCF5 , A0A1Z5RBN7 , A1E9S0
Pfam PF16575 PF01535 PF16575
Panther DB PTHR12755 PTHR12755:SF8
NCBI CDD -
KEGG Orthology K06947; GRC3, polynucleotide 5'-hydroxyl-kinase GRC3/NOL9
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11010 : Pre-mRNA cleavage complex II protein family
RAP-DB (Rice) LOC_Os01g25240.1 : expressed protein
MaizeGDB (Corn) Zm00025a028562
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G128200 RNA recognition motif containing protein, putative, expressed -
2 Sobic.001G359000 expressed protein -
3 Sobic.009G168100 expressed protein -
4 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
5 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
6 Sobic.009G084700 - -
7 Sobic.002G151500 R-interacting factor 1, putative, expressed -
8 Sobic.008G018200 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
9 Sobic.006G189000 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
10 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
11 Sobic.009G066600 expressed protein -
12 Sobic.002G322700 expressed protein -
13 Sobic.006G167100 - -
14 Sobic.001G528100 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.008G140600 targeting protein for Xklp2 containing protein, expressed -
16 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
17 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
18 Sobic.008G016500 rhamnogalacturonate lyase, putative, expressed K18195: RGL4, rhamnogalacturonan endolyase
19 Sobic.003G394900 ZOS1-20 - C2H2 zinc finger protein, expressed -
20 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -


Gene co-expression network
sample Sobic006G020000 Sobic006G020000 Sobic001G128200 Sobic001G128200 Sobic006G020000--Sobic001G128200 Sobic001G359000 Sobic001G359000 Sobic006G020000--Sobic001G359000 Sobic009G168100 Sobic009G168100 Sobic006G020000--Sobic009G168100 Sobic002G304500 Sobic002G304500 Sobic006G020000--Sobic002G304500 Sobic001G131900 Sobic001G131900 Sobic006G020000--Sobic001G131900 Sobic009G084700 Sobic009G084700 Sobic006G020000--Sobic009G084700 Sobic002G151500 Sobic002G151500 Sobic006G020000--Sobic002G151500 Sobic008G018200 Sobic008G018200 Sobic006G020000--Sobic008G018200 Sobic006G189000 Sobic006G189000 Sobic006G020000--Sobic006G189000 Sobic003G007200 Sobic003G007200 Sobic001G128200--Sobic003G007200 Sobic008G155900 Sobic008G155900 Sobic001G128200--Sobic008G155900 Sobic007G017100 Sobic007G017100 Sobic001G128200--Sobic007G017100 Sobic003G343200 Sobic003G343200 Sobic001G128200--Sobic003G343200 Sobic001G534400 Sobic001G534400 Sobic001G128200--Sobic001G534400 Sobic001G128200--Sobic006G020000 Sobic010G024000 Sobic010G024000 Sobic001G128200--Sobic010G024000 Sobic001G033300 Sobic001G033300 Sobic001G128200--Sobic001G033300 Sobic002G052800 Sobic002G052800 Sobic001G128200--Sobic002G052800 Sobic004G149500 Sobic004G149500 Sobic001G359000--Sobic004G149500 Sobic002G158401 Sobic002G158401 Sobic001G359000--Sobic002G158401 Sobic004G158600 Sobic004G158600 Sobic001G359000--Sobic004G158600 Sobic001G359000--Sobic009G168100 Sobic006G014632 Sobic006G014632 Sobic001G359000--Sobic006G014632 Sobic010G090000 Sobic010G090000 Sobic001G359000--Sobic010G090000 Sobic003G177600 Sobic003G177600 Sobic001G359000--Sobic003G177600 Sobic008G163900 Sobic008G163900 Sobic001G359000--Sobic008G163900 Sobic003G102100 Sobic003G102100 Sobic001G359000--Sobic003G102100 Sobic008G140600 Sobic008G140600 Sobic009G168100--Sobic008G140600 Sobic009G168100--Sobic001G359000 Sobic005G045800 Sobic005G045800 Sobic009G168100--Sobic005G045800 Sobic008G073500 Sobic008G073500 Sobic009G168100--Sobic008G073500 Sobic009G168100--Sobic010G090000 Sobic003G376900 Sobic003G376900 Sobic009G168100--Sobic003G376900 Sobic003G377300 Sobic003G377300 Sobic009G168100--Sobic003G377300 Sobic009G168100--Sobic003G177600 Sobic001G385300 Sobic001G385300 Sobic009G168100--Sobic001G385300 Sobic004G064800 Sobic004G064800 Sobic002G304500--Sobic004G064800 Sobic005G201200 Sobic005G201200 Sobic002G304500--Sobic005G201200 Sobic008G007800 Sobic008G007800 Sobic002G304500--Sobic008G007800 Sobic010G255400 Sobic010G255400 Sobic002G304500--Sobic010G255400 Sobic002G016000 Sobic002G016000 Sobic002G304500--Sobic002G016000 Sobic006G199500 Sobic006G199500 Sobic002G304500--Sobic006G199500 Sobic004G328100 Sobic004G328100 Sobic002G304500--Sobic004G328100 Sobic008G007700 Sobic008G007700 Sobic002G304500--Sobic008G007700 Sobic004G038400 Sobic004G038400 Sobic002G304500--Sobic004G038400 Sobic003G293400 Sobic003G293400 Sobic001G131900--Sobic003G293400 Sobic003G352900 Sobic003G352900 Sobic001G131900--Sobic003G352900 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G131900--Sobic001G385300 Sobic001G131900--Sobic005G045800 Sobic004G298600 Sobic004G298600 Sobic001G131900--Sobic004G298600 Sobic002G420100 Sobic002G420100 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100 Sobic009G084800 Sobic009G084800 Sobic009G084700--Sobic009G084800 Sobic010G009700 Sobic010G009700 Sobic009G084700--Sobic010G009700 Sobic002G322700 Sobic002G322700 Sobic009G084700--Sobic002G322700 Sobic009G084700--Sobic002G151500 Sobic009G084700--Sobic008G140600 Sobic010G038200 Sobic010G038200 Sobic009G084700--Sobic010G038200 Sobic007G146200 Sobic007G146200 Sobic009G084700--Sobic007G146200 Sobic008G188800 Sobic008G188800 Sobic009G084700--Sobic008G188800 Sobic009G084700--Sobic001G131900 Sobic002G151500--Sobic001G131900 Sobic004G313400 Sobic004G313400 Sobic002G151500--Sobic004G313400 Sobic002G151500--Sobic010G009700 Sobic002G151500--Sobic003G377300 Sobic002G151500--Sobic003G352900 Sobic002G151500--Sobic007G144100 Sobic003G258100 Sobic003G258100 Sobic002G151500--Sobic003G258100 Sobic002G151500--Sobic005G045800 Sobic002G151500--Sobic004G298600 Sobic008G018200--Sobic002G420100 Sobic002G308000 Sobic002G308000 Sobic008G018200--Sobic002G308000 Sobic007G189100 Sobic007G189100 Sobic008G018200--Sobic007G189100 Sobic002G222200 Sobic002G222200 Sobic008G018200--Sobic002G222200 Sobic001G528100 Sobic001G528100 Sobic008G018200--Sobic001G528100 Sobic002G392400 Sobic002G392400 Sobic008G018200--Sobic002G392400 Sobic010G253200 Sobic010G253200 Sobic008G018200--Sobic010G253200 Sobic008G018200--Sobic003G293400 Sobic004G011700 Sobic004G011700 Sobic008G018200--Sobic004G011700 Sobic006G189000--Sobic001G385300 Sobic006G189000--Sobic001G076600 Sobic006G189000--Sobic003G376900 Sobic006G189000--Sobic001G131900 Sobic006G189000--Sobic003G352900 Sobic006G189000--Sobic004G298600 Sobic006G189000--Sobic010G009700 Sobic006G189000--Sobic005G045800 Sobic001G380700 Sobic001G380700 Sobic006G189000--Sobic001G380700
Octagon: transcription factors


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