Gene annotation
Transcriptome id Sobic.001G528100.1
Synonym Sb01g049140, RCI3A, RCI3
Functional annotation peroxidase precursor, putative, expressed
UniProt C5X0X1
Pfam PF00141
Panther DB PTHR31235 PTHR31235:SF24
NCBI CDD -
KEGG Orthology K00430; peroxidase
Gene Ontology GO:0006979; response to oxidative stress GO:0004601peroxidase activity


Orthologs (automatic annotation)
TAIR AT1G05260 : Peroxidase superfamily protein
RAP-DB (Rice) LOC_Os03g02920.1 : peroxidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a054380 , Zm00025a033295 , Zm00025a021632 , Zm00025a055305 , Zm00025a036435 , Zm00025a010520 , Zm00025a019999 , Zm00025a025891 , Zm00025a033294 , Zm00025a018007 , Zm00025a049143 , Zm00025a049141 , Zm00025a000294 , Zm00025a003157 , Zm00025a024245 , Zm00025a044120
Brachypodium KQJ86402 , KQJ86398 , KQK03757 , KQK03746 , KQK03846 , KQK04186 , KQK04189 , KQK03745 , KQK04037 , KQK07688 , KQJ97598 , KQK07348 , KQK22706 , KQK16275 , KQJ97885 , KQK14648 , KQK07692 , KQJ95997 , KQK04040 , KQK18293 , KQJ94189 , KQK10120 , KQK23930 , KQK23931 , PNT66525 , PNT66526 , KQK01984 , KQK14656 , KQK17328 , KQK05560
Barley HORVU1Hr1G020690.4 , HORVU1Hr1G020690.5 , HORVU1Hr1G020690.1 , HORVU1Hr1G020690.2 , HORVU1Hr1G020690.3 , HORVU7Hr1G089480.2 , HORVU7Hr1G089480.3 , HORVU7Hr1G089480.1 , HORVU7Hr1G089480.4 , HORVU4Hr1G084910.1 , HORVU4Hr1G084910.2 , HORVU4Hr1G084910.3 , HORVU4Hr1G016940.1 , HORVU4Hr1G016940.3 , HORVU4Hr1G084920.8 , HORVU4Hr1G084920.1 , HORVU1Hr1G066550.1 , HORVU3Hr1G077580.4 , HORVU3Hr1G077580.5 , HORVU3Hr1G077580.2 , HORVU7Hr1G076120.3 , HORVU7Hr1G076120.2 , HORVU7Hr1G076120.1 , HORVU7Hr1G076120.5 , HORVU7Hr1G076120.4 , HORVU4Hr1G084920.9 , HORVU4Hr1G084920.3 , HORVU4Hr1G084920.2 , HORVU4Hr1G084920.5 , HORVU4Hr1G084920.4 , HORVU4Hr1G084920.7 , HORVU4Hr1G084920.6 , HORVU1Hr1G066610.3 , HORVU1Hr1G066610.4 , HORVU7Hr1G102480.4 , HORVU7Hr1G102480.6 , HORVU7Hr1G102480.7 , HORVU7Hr1G102480.1 , HORVU7Hr1G102480.2 , HORVU7Hr1G102480.3 , HORVU4Hr1G090050.4 , HORVU4Hr1G090050.5 , HORVU4Hr1G090050.1 , HORVU4Hr1G090050.2 , HORVU4Hr1G090050.3 , HORVU3Hr1G112350.1 , HORVU3Hr1G112350.2 , HORVU2Hr1G064330.1 , HORVU6Hr1G010340.1 , HORVU1Hr1G066600.1 , HORVU1Hr1G066540.1 , HORVU1Hr1G023750.1 , HORVU1Hr1G023750.2 , HORVU3Hr1G111980.1 , HORVU7Hr1G098110.8 , HORVU7Hr1G098110.6 , HORVU7Hr1G098110.7 , HORVU7Hr1G098110.4 , HORVU7Hr1G098110.5 , HORVU7Hr1G098110.2 , HORVU7Hr1G098110.3 , HORVU7Hr1G098110.1 , HORVU3Hr1G112000.1 , HORVU7Hr1G083550.6 , HORVU7Hr1G083550.7 , HORVU7Hr1G083550.4 , HORVU7Hr1G083550.5 , HORVU7Hr1G083550.2 , HORVU7Hr1G083550.3 , HORVU6Hr1G026600.2 , HORVU6Hr1G026600.3 , HORVU6Hr1G026600.1 , HORVU6Hr1G026600.4 , HORVU7Hr1G089360.2 , HORVU7Hr1G089360.1
Wheat TraesCS4D02G342500 , TraesCS6A02G047600 , TraesCS7D02G315600 , TraesCS1B02G330400 , TraesCS1B02G330400 , TraesCS1B02G331200 , TraesCS1B02G330800 , TraesCS6B02G354600 , TraesCS1B02G330800 , TraesCS1B02G115900 , TraesCS2A02G108200 , TraesCS7A02G089700 , TraesCS7B02G275200 , TraesCS1A02G318900 , TraesCS1A02G318700 , TraesCS7D02G420500 , TraesCS1A02G104300 , TraesCS7A02G424100 , TraesCS7B02G219900 , TraesCS1D02G318200 , TraesCS4A02G076700 , TraesCS7B02G150800 , TraesCS3D02G151200 , TraesCS1D02G318400 , TraesCS1D02G110600 , TraesCS1A02G318000 , TraesCS7B02G353100 , TraesCS7B02G353100 , TraesCS7A02G339600 , TraesCS4D02G102600 , TraesCS7B02G353200 , TraesCS7B02G353200 , TraesCS6B02G166200 , TraesCS7D02G370000 , TraesCS7D02G370000 , TraesCS4A02G443000 , TraesCS2D02G265000 , TraesCS5A02G323200 , TraesCS7A02G319100 , TraesCS3A02G325100 , TraesCS5D02G330300 , TraesCS3A02G325100 , TraesCS4B02G105800 , TraesCS3D02G318500 , TraesCS1A02G318500 , TraesCS1B02G330500 , TraesCS2B02G125700 , TraesCS5A02G516300 , TraesCS4B02G347700 , TraesCS1D02G203700 , TraesCS7A02G452900 , TraesCS3A02G135200 , TraesCS7D02G253200 , TraesCS7D02G347300 , TraesCS7D02G417400 , TraesCS1D02G318300 , TraesCS1D02G317800 , TraesCS1B02G214900 , TraesCS1D02G317700 , TraesCS7A02G453000 , TraesCS1A02G318200 , TraesCS4A02G196000 , TraesCS3D02G516900 , TraesCS7B02G325800 , TraesCS7D02G370400 , TraesCS2D02G108300 , TraesCS1D02G096400 , TraesCS4D02G234000 , TraesCS2D02G153800 , TraesCS1D02G317900 , TraesCS7A02G352900 , TraesCS4B02G347600 , TraesCS4B02G347600 , TraesCS7B02G275000 , TraesCS1A02G318400 , TraesCS7B02G150800 , TraesCS1B02G330600 , TraesCS5A02G516200 , TraesCS1D02G318700 , TraesCS4B02G340100 , TraesCS5B02G323700 , TraesCS7A02G428200 , TraesCS7D02G442200 , TraesCS4B02G340200 , TraesCS7D02G442300 , TraesCS4D02G342600 , TraesCS2B02G284800 , TraesCS6A02G324200 , TraesCS7B02G328400 , TraesCS1A02G200200 , TraesCS1D02G318100 , TraesCS1D02G402200 , TraesCS2D02G036700 , TraesCS1A02G317900 , TraesCS1A02G077700 , TraesCS1A02G318600 , TraesCS3B02G577900 , TraesCS1B02G330200 , TraesCS6D02G303900 , TraesCS6A02G047300 , TraesCS1A02G318300 , TraesCS7A02G254700 , TraesCS1B02G330700 , TraesCS4A02G201700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
2 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
3 Sobic.008G018200 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
4 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
5 Sobic.005G185200 - -
6 Sobic.010G182000 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
7 Sobic.004G038400 fruit bromelain precursor, putative, expressed -
8 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
9 Sobic.001G188000 SAM-dependent methyltransferase, putative, expressed -
10 Sobic.002G241100 glycosyl transferase 8 domain containing protein, putative, expressed -
11 Sobic.004G155700 LSM domain containing protein, expressed -
12 Sobic.001G080800 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
13 Sobic.006G272300 pentatricopeptide, putative, expressed -
14 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
15 Sobic.008G070600 leafbladeless1, putative, expressed -
16 Sobic.010G157200 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
17 Sobic.002G087200 OsFBX231 - F-box domain containing protein, expressed -
18 Sobic.001G218600 MATH domain containing protein, expressed -
19 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
20 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4


Gene co-expression network
sample Sobic001G528100 Sobic001G528100 Sobic001G131900 Sobic001G131900 Sobic001G528100--Sobic001G131900 Sobic002G420100 Sobic002G420100 Sobic001G528100--Sobic002G420100 Sobic008G018200 Sobic008G018200 Sobic001G528100--Sobic008G018200 Sobic003G293400 Sobic003G293400 Sobic001G528100--Sobic003G293400 Sobic005G185200 Sobic005G185200 Sobic001G528100--Sobic005G185200 Sobic010G182000 Sobic010G182000 Sobic001G528100--Sobic010G182000 Sobic004G038400 Sobic004G038400 Sobic001G528100--Sobic004G038400 Sobic003G423700 Sobic003G423700 Sobic001G528100--Sobic003G423700 Sobic001G188000 Sobic001G188000 Sobic001G528100--Sobic001G188000 Sobic001G131900--Sobic003G293400 Sobic003G352900 Sobic003G352900 Sobic001G131900--Sobic003G352900 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G385300 Sobic001G385300 Sobic001G131900--Sobic001G385300 Sobic005G045800 Sobic005G045800 Sobic001G131900--Sobic005G045800 Sobic004G298600 Sobic004G298600 Sobic001G131900--Sobic004G298600 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100 Sobic010G253200 Sobic010G253200 Sobic002G420100--Sobic010G253200 Sobic002G420100--Sobic010G182000 Sobic004G241300 Sobic004G241300 Sobic002G420100--Sobic004G241300 Sobic002G420100--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic002G420100--Sobic008G156600 Sobic002G420100--Sobic003G293400 Sobic002G420100--Sobic001G131900 Sobic001G400000 Sobic001G400000 Sobic002G420100--Sobic001G400000 Sobic008G104000 Sobic008G104000 Sobic002G420100--Sobic008G104000 Sobic008G018200--Sobic002G420100 Sobic002G308000 Sobic002G308000 Sobic008G018200--Sobic002G308000 Sobic007G189100 Sobic007G189100 Sobic008G018200--Sobic007G189100 Sobic002G222200 Sobic002G222200 Sobic008G018200--Sobic002G222200 Sobic008G018200--Sobic001G528100 Sobic002G392400 Sobic002G392400 Sobic008G018200--Sobic002G392400 Sobic008G018200--Sobic010G253200 Sobic008G018200--Sobic003G293400 Sobic004G011700 Sobic004G011700 Sobic008G018200--Sobic004G011700 Sobic003G293400--Sobic001G131900 Sobic003G293400--Sobic003G352900 Sobic004G198300 Sobic004G198300 Sobic003G293400--Sobic004G198300 Sobic003G293400--Sobic001G076600 Sobic003G293400--Sobic002G420100 Sobic003G293400--Sobic004G038400 Sobic004G026600 Sobic004G026600 Sobic003G293400--Sobic004G026600 Sobic003G293400--Sobic004G298600 Sobic003G293400--Sobic007G144100 Sobic003G044700 Sobic003G044700 Sobic005G185200--Sobic003G044700 Sobic001G135200 Sobic001G135200 Sobic005G185200--Sobic001G135200 Sobic005G185200--Sobic001G188000 Sobic001G203800 Sobic001G203800 Sobic005G185200--Sobic001G203800 Sobic005G185200--Sobic001G528100 Sobic002G037600 Sobic002G037600 Sobic005G185200--Sobic002G037600 Sobic003G284100 Sobic003G284100 Sobic005G185200--Sobic003G284100 Sobic004G328100 Sobic004G328100 Sobic005G185200--Sobic004G328100 Sobic003G335300 Sobic003G335300 Sobic005G185200--Sobic003G335300 Sobic010G182000--Sobic002G420100 Sobic010G182000--Sobic003G423700 Sobic010G182000--Sobic008G156600 Sobic010G182000--Sobic008G104000 Sobic001G072000 Sobic001G072000 Sobic010G182000--Sobic001G072000 Sobic009G163100 Sobic009G163100 Sobic010G182000--Sobic009G163100 Sobic010G182000--Sobic001G400000 Sobic002G172401 Sobic002G172401 Sobic010G182000--Sobic002G172401 Sobic005G050400 Sobic005G050400 Sobic010G182000--Sobic005G050400 Sobic005G173700 Sobic005G173700 Sobic004G038400--Sobic005G173700 Sobic009G048700 Sobic009G048700 Sobic004G038400--Sobic009G048700 Sobic004G038400--Sobic001G076600 Sobic004G168900 Sobic004G168900 Sobic004G038400--Sobic004G168900 Sobic003G005700 Sobic003G005700 Sobic004G038400--Sobic003G005700 Sobic004G038400--Sobic007G144100 Sobic002G243400 Sobic002G243400 Sobic004G038400--Sobic002G243400 Sobic008G056600 Sobic008G056600 Sobic004G038400--Sobic008G056600 Sobic009G002100 Sobic009G002100 Sobic004G038400--Sobic009G002100 Sobic001G126800 Sobic001G126800 Sobic003G423700--Sobic001G126800 Sobic003G423700--Sobic004G241300 Sobic003G423700--Sobic008G104000 Sobic003G423700--Sobic008G156600 Sobic003G423700--Sobic002G420100 Sobic003G423700--Sobic009G163100 Sobic003G423700--Sobic010G182000 Sobic008G171900 Sobic008G171900 Sobic003G423700--Sobic008G171900 Sobic003G423700--Sobic010G253200 Sobic010G069500 Sobic010G069500 Sobic001G188000--Sobic010G069500 Sobic002G414800 Sobic002G414800 Sobic001G188000--Sobic002G414800 Sobic001G188000--Sobic004G328100 Sobic002G348400 Sobic002G348400 Sobic001G188000--Sobic002G348400 Sobic001G280500 Sobic001G280500 Sobic001G188000--Sobic001G280500 Sobic001G309200 Sobic001G309200 Sobic001G188000--Sobic001G309200 Sobic002G397900 Sobic002G397900 Sobic001G188000--Sobic002G397900 Sobic001G188000--Sobic001G131900 Sobic002G304500 Sobic002G304500 Sobic001G188000--Sobic002G304500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.