Gene annotation
Transcriptome id Sobic.008G016500.1
Synonym Sb08g001440
Functional annotation rhamnogalacturonate lyase, putative, expressed
UniProt C5YQM5
Pfam PF14686 PF14683 PF06045
Panther DB PTHR32018 PTHR32018:SF2
NCBI CDD -
KEGG Orthology K18195; RGL4, rhamnogalacturonan endolyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09890 : Rhamnogalacturonate lyase family protein
RAP-DB (Rice) LOC_Os12g03790.1 : rhamnogalacturonate lyase, putative, expressed
MaizeGDB (Corn) Zm00025a033385 , Zm00025a019504 , Zm00025a019503
Brachypodium KQJ89559 , PNT64234
Barley HORVU6Hr1G019340.1 , HORVU6Hr1G010870.10 , HORVU6Hr1G010870.8 , HORVU6Hr1G010870.9 , HORVU6Hr1G019370.1 , HORVU6Hr1G010870.1 , HORVU6Hr1G010870.2 , HORVU6Hr1G010870.3 , HORVU6Hr1G010870.4 , HORVU6Hr1G010870.5 , HORVU6Hr1G010870.6 , HORVU6Hr1G010870.7 , HORVU4Hr1G026250.3 , HORVU4Hr1G026250.2 , HORVU4Hr1G026250.6 , HORVU4Hr1G026250.5 , HORVU4Hr1G026250.4
Wheat TraesCS4A02G187200 , TraesCS6B02G078500 , TraesCS6D02G096400 , TraesCS6D02G096200 , TraesCS6A02G108200 , TraesCS6B02G136900 , TraesCS6B02G136800 , TraesCS4B02G130900 , TraesCS6A02G108400 , TraesCS4D02G126300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G428300 strictosidine synthase, putative, expressed -
2 Sobic.003G384200 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
3 Sobic.010G053500 expressed protein -
4 Sobic.002G157400 ankyrin, putative, expressed -
5 Sobic.003G140100 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.007G049600 expressed protein -
7 Sobic.002G360801 - -
8 Sobic.001G359000 expressed protein -
9 Sobic.005G164000 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
10 Sobic.001G369200 terpene synthase, putative, expressed -
11 Sobic.006G014632 - -
12 Sobic.004G223100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@response regulator receiver domain containing protein, expressed K14492: two-component response regulator ARR-A family
13 Sobic.004G149500 expressed protein -
14 Sobic.002G158401 - -
15 Sobic.008G106301 - -
16 Sobic.005G226600 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.002G129800 LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
18 Sobic.005G006500 - -
19 Sobic.006G082850 - -
20 Sobic.002G022700 CSLC10 - cellulose synthase-like family C, expressed -


Gene co-expression network
sample Sobic008G016500 Sobic008G016500 Sobic001G428300 Sobic001G428300 Sobic008G016500--Sobic001G428300 Sobic003G384200 Sobic003G384200 Sobic008G016500--Sobic003G384200 Sobic010G053500 Sobic010G053500 Sobic008G016500--Sobic010G053500 Sobic002G157400 Sobic002G157400 Sobic008G016500--Sobic002G157400 Sobic003G140100 Sobic003G140100 Sobic008G016500--Sobic003G140100 Sobic007G049600 Sobic007G049600 Sobic008G016500--Sobic007G049600 Sobic002G360801 Sobic002G360801 Sobic008G016500--Sobic002G360801 Sobic001G359000 Sobic001G359000 Sobic008G016500--Sobic001G359000 Sobic005G164000 Sobic005G164000 Sobic008G016500--Sobic005G164000 Sobic001G428300--Sobic010G053500 Sobic001G428300--Sobic002G157400 Sobic001G428300--Sobic008G016500 Sobic001G428300--Sobic007G049600 Sobic001G428300--Sobic003G384200 Sobic001G428300--Sobic003G140100 Sobic001G428300--Sobic002G360801 Sobic004G223100 Sobic004G223100 Sobic001G428300--Sobic004G223100 Sobic005G226600 Sobic005G226600 Sobic001G428300--Sobic005G226600 Sobic003G384200--Sobic001G428300 Sobic003G384200--Sobic008G016500 Sobic003G384200--Sobic010G053500 Sobic003G384200--Sobic002G157400 Sobic003G384200--Sobic007G049600 Sobic003G384200--Sobic003G140100 Sobic003G384200--Sobic002G360801 Sobic004G149500 Sobic004G149500 Sobic003G384200--Sobic004G149500 Sobic002G158401 Sobic002G158401 Sobic003G384200--Sobic002G158401 Sobic010G053500--Sobic002G157400 Sobic010G053500--Sobic003G140100 Sobic010G053500--Sobic001G428300 Sobic010G053500--Sobic007G049600 Sobic010G053500--Sobic002G360801 Sobic010G053500--Sobic008G016500 Sobic010G053500--Sobic003G384200 Sobic010G053500--Sobic005G226600 Sobic010G053500--Sobic004G223100 Sobic002G157400--Sobic010G053500 Sobic002G157400--Sobic003G140100 Sobic002G157400--Sobic007G049600 Sobic002G157400--Sobic001G428300 Sobic002G157400--Sobic002G360801 Sobic002G157400--Sobic008G016500 Sobic002G157400--Sobic005G226600 Sobic002G157400--Sobic004G223100 Sobic002G157400--Sobic005G164000 Sobic003G140100--Sobic002G157400 Sobic003G140100--Sobic010G053500 Sobic003G140100--Sobic007G049600 Sobic003G140100--Sobic001G428300 Sobic003G140100--Sobic005G164000 Sobic003G140100--Sobic002G360801 Sobic003G140100--Sobic005G226600 Sobic003G140100--Sobic008G016500 Sobic003G140100--Sobic004G223100 Sobic007G049600--Sobic002G157400 Sobic007G049600--Sobic010G053500 Sobic007G049600--Sobic001G428300 Sobic007G049600--Sobic003G140100 Sobic007G049600--Sobic002G360801 Sobic007G049600--Sobic005G226600 Sobic007G049600--Sobic008G016500 Sobic007G049600--Sobic004G223100 Sobic007G049600--Sobic003G384200 Sobic002G360801--Sobic007G049600 Sobic002G360801--Sobic010G053500 Sobic002G360801--Sobic002G157400 Sobic002G360801--Sobic003G140100 Sobic002G360801--Sobic001G428300 Sobic002G360801--Sobic005G226600 Sobic002G360801--Sobic008G016500 Sobic002G360801--Sobic004G223100 Sobic002G360801--Sobic003G384200 Sobic001G359000--Sobic004G149500 Sobic001G359000--Sobic002G158401 Sobic004G158600 Sobic004G158600 Sobic001G359000--Sobic004G158600 Sobic009G168100 Sobic009G168100 Sobic001G359000--Sobic009G168100 Sobic006G014632 Sobic006G014632 Sobic001G359000--Sobic006G014632 Sobic010G090000 Sobic010G090000 Sobic001G359000--Sobic010G090000 Sobic003G177600 Sobic003G177600 Sobic001G359000--Sobic003G177600 Sobic008G163900 Sobic008G163900 Sobic001G359000--Sobic008G163900 Sobic003G102100 Sobic003G102100 Sobic001G359000--Sobic003G102100 Sobic005G006500 Sobic005G006500 Sobic005G164000--Sobic005G006500 Sobic002G248300 Sobic002G248300 Sobic005G164000--Sobic002G248300 Sobic005G164000--Sobic003G140100 Sobic002G129800 Sobic002G129800 Sobic005G164000--Sobic002G129800 Sobic005G164000--Sobic002G157400 Sobic005G164000--Sobic004G223100 Sobic005G164000--Sobic010G053500 Sobic005G164000--Sobic005G226600 Sobic001G152400 Sobic001G152400 Sobic005G164000--Sobic001G152400
Octagon: transcription factors


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