Gene annotation
Transcriptome id Sobic.005G226600.1
Synonym Sb05g027490
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Y8I3
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF180
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72220 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os11g47690.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012816
Brachypodium -
Barley HORVU4Hr1G028140.1 , HORVU6Hr1G091610.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G048000 expressed protein -
2 Sobic.003G271700 - -
3 Sobic.001G472400 pumilio domain-containing protein PPD1, putative, expressed -
4 Sobic.006G079500 AMP-binding domain containing protein, expressed -
5 Sobic.009G046000 desiccation-related protein PCC13-62 precursor, putative, expressed -
6 Sobic.005G226500 thaumatin family domain containing protein, expressed -
7 Sobic.004G318800 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
8 Sobic.007G206000 dihydroflavonol-4-reductase, putative, expressed -
9 Sobic.007G048500 CXXC1 - Cysteine-rich protein with CXXC and CXXXC motifs precursor, putative, expressed -
10 Sobic.001G152400 expressed protein -
11 Sobic.002G399600 LTPL2 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.007G107500 LTPL4 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.007G037400 expressed protein -
14 Sobic.006G006900 expressed protein -
15 Sobic.007G098600 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
17 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
18 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
19 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -
20 Sobic.001G133200 OsFBX85 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic005G226600 Sobic005G226600 Sobic010G048000 Sobic010G048000 Sobic005G226600--Sobic010G048000 Sobic003G271700 Sobic003G271700 Sobic005G226600--Sobic003G271700 Sobic001G472400 Sobic001G472400 Sobic005G226600--Sobic001G472400 Sobic006G079500 Sobic006G079500 Sobic005G226600--Sobic006G079500 Sobic009G046000 Sobic009G046000 Sobic005G226600--Sobic009G046000 Sobic005G226500 Sobic005G226500 Sobic005G226600--Sobic005G226500 Sobic004G318800 Sobic004G318800 Sobic005G226600--Sobic004G318800 Sobic007G206000 Sobic007G206000 Sobic005G226600--Sobic007G206000 Sobic007G048500 Sobic007G048500 Sobic005G226600--Sobic007G048500 Sobic010G048000--Sobic001G472400 Sobic001G102600 Sobic001G102600 Sobic010G048000--Sobic001G102600 Sobic010G189366 Sobic010G189366 Sobic010G048000--Sobic010G189366 Sobic004G349150 Sobic004G349150 Sobic010G048000--Sobic004G349150 Sobic010G048000--Sobic009G046000 Sobic006G267400 Sobic006G267400 Sobic010G048000--Sobic006G267400 Sobic004G001700 Sobic004G001700 Sobic010G048000--Sobic004G001700 Sobic010G187400 Sobic010G187400 Sobic010G048000--Sobic010G187400 Sobic005G090000 Sobic005G090000 Sobic010G048000--Sobic005G090000 Sobic003G271700--Sobic009G046000 Sobic006G089700 Sobic006G089700 Sobic003G271700--Sobic006G089700 Sobic003G271700--Sobic007G206000 Sobic010G236000 Sobic010G236000 Sobic003G271700--Sobic010G236000 Sobic004G202800 Sobic004G202800 Sobic003G271700--Sobic004G202800 Sobic002G410600 Sobic002G410600 Sobic003G271700--Sobic002G410600 Sobic005G200700 Sobic005G200700 Sobic003G271700--Sobic005G200700 Sobic003G038700 Sobic003G038700 Sobic003G271700--Sobic003G038700 Sobic006G006800 Sobic006G006800 Sobic003G271700--Sobic006G006800 Sobic001G472400--Sobic010G189366 Sobic001G472400--Sobic001G102600 Sobic001G472400--Sobic004G349150 Sobic001G472400--Sobic004G001700 Sobic001G472400--Sobic006G267400 Sobic001G472400--Sobic010G187400 Sobic010G259400 Sobic010G259400 Sobic001G472400--Sobic010G259400 Sobic001G472400--Sobic004G202800 Sobic008G032400 Sobic008G032400 Sobic001G472400--Sobic008G032400 Sobic006G079500--Sobic005G226500 Sobic006G079500--Sobic007G048500 Sobic003G016000 Sobic003G016000 Sobic006G079500--Sobic003G016000 Sobic006G079500--Sobic007G206000 Sobic003G088200 Sobic003G088200 Sobic006G079500--Sobic003G088200 Sobic007G098600 Sobic007G098600 Sobic006G079500--Sobic007G098600 Sobic006G006900 Sobic006G006900 Sobic006G079500--Sobic006G006900 Sobic002G427550 Sobic002G427550 Sobic006G079500--Sobic002G427550 Sobic001G133200 Sobic001G133200 Sobic006G079500--Sobic001G133200 Sobic009G046000--Sobic002G410600 Sobic009G046000--Sobic003G038700 Sobic007G000600 Sobic007G000600 Sobic009G046000--Sobic007G000600 Sobic009G046000--Sobic007G206000 Sobic009G046000--Sobic010G236000 Sobic009G046000--Sobic008G032400 Sobic009G046000--Sobic005G200700 Sobic007G037400 Sobic007G037400 Sobic009G046000--Sobic007G037400 Sobic007G107500 Sobic007G107500 Sobic009G046000--Sobic007G107500 Sobic005G226500--Sobic007G107500 Sobic005G226500--Sobic007G037400 Sobic005G226500--Sobic006G006900 Sobic002G270400 Sobic002G270400 Sobic005G226500--Sobic002G270400 Sobic002G399600 Sobic002G399600 Sobic005G226500--Sobic002G399600 Sobic005G226500--Sobic007G098600 Sobic005G226500--Sobic001G133200 Sobic007G076100 Sobic007G076100 Sobic004G318800--Sobic007G076100 Sobic004G318800--Sobic006G079500 Sobic001G341700 Sobic001G341700 Sobic004G318800--Sobic001G341700 Sobic006G092300 Sobic006G092300 Sobic004G318800--Sobic006G092300 Sobic005G218000 Sobic005G218000 Sobic004G318800--Sobic005G218000 Sobic004G318800--Sobic006G089700 Sobic004G318800--Sobic007G206000 Sobic004G318800--Sobic007G048500 Sobic004G318800--Sobic005G226500 Sobic007G206000--Sobic003G038700 Sobic007G206000--Sobic005G226500 Sobic007G206000--Sobic002G410600 Sobic007G206000--Sobic010G236000 Sobic007G206000--Sobic008G032400 Sobic007G206000--Sobic006G006900 Sobic007G206000--Sobic007G098600 Sobic007G206000--Sobic007G037400 Sobic007G206000--Sobic007G107500 Sobic007G048500--Sobic005G226500 Sobic007G048500--Sobic007G098600 Sobic007G048500--Sobic001G133200
Octagon: transcription factors


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