Gene annotation
Transcriptome id Sobic.003G382100.1,Sobic.003G382100.2
Synonym Sb03g042180, AL4
Functional annotation PHD finger protein, putative, expressed
UniProt A0A1B6Q7F5 , A0A1B6Q7G5
Pfam PF00628 PF12165
Panther DB PTHR12321 PTHR12321:SF55
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G42790 : alfin-like 3
RAP-DB (Rice) LOC_Os01g66420.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a037391 , Zm00025a026509 , Zm00025a039480
Brachypodium KQK10956 , KQK10955 , KQK06210 , KQJ88767 , PNT71238
Barley HORVU1Hr1G064250.16 , HORVU1Hr1G064250.17 , HORVU1Hr1G064250.14 , HORVU1Hr1G064250.15 , HORVU1Hr1G064250.12 , HORVU1Hr1G064250.13 , HORVU1Hr1G064250.10 , HORVU1Hr1G064250.11 , HORVU1Hr1G064250.18 , HORVU1Hr1G064250.19 , HORVU1Hr1G064250.4 , HORVU1Hr1G064250.5 , HORVU1Hr1G064250.6 , HORVU1Hr1G064250.7 , HORVU1Hr1G064250.2 , HORVU1Hr1G064250.3 , HORVU1Hr1G064250.8 , HORVU1Hr1G064250.9 , HORVU3Hr1G090540.15 , HORVU3Hr1G090540.14 , HORVU3Hr1G090540.16 , HORVU3Hr1G090540.11 , HORVU3Hr1G090540.10 , HORVU3Hr1G090540.13 , HORVU3Hr1G090540.12 , HORVU3Hr1G090540.9 , HORVU3Hr1G090540.8 , HORVU3Hr1G090540.1 , HORVU3Hr1G090540.3 , HORVU3Hr1G090540.2 , HORVU3Hr1G090540.5 , HORVU3Hr1G090540.4 , HORVU3Hr1G090540.7 , HORVU3Hr1G090540.6
Wheat TraesCS1A02G262200 , TraesCS3A02G403600 , TraesCS3A02G403600 , TraesCS3B02G437100 , TraesCS1B02G272800 , TraesCS1B02G272800 , TraesCS1B02G272800 , TraesCS1D02G262200 , TraesCS3D02G398800 , TraesCS3D02G398800
Populus PNT42774 , PNT42773


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cDNA sequences
Sobic.003G382100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
2 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
3 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
4 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
5 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
6 Sobic.005G032600 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
7 Sobic.009G087700 proline-rich family protein, putative, expressed -
8 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
9 Sobic.005G062600 MLO domain containing protein, putative, expressed K08472: mlo protein
10 Sobic.001G138800 GCRP4 - Glycine and cysteine rich family protein precursor, expressed -
11 Sobic.004G327600 expressed protein -
12 Sobic.004G207000 fasciated ear2, putative, expressed -
13 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
14 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
15 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
16 Sobic.007G153700 transcription regulator, putative, expressed -
17 Sobic.010G149600 intracellular protein transport protein USO1-related, putative, expressed -
18 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
19 Sobic.006G160200 MSP domain containing protein, expressed -
20 Sobic.005G021700 EMB1379, putative, expressed -


Gene co-expression network
sample Sobic003G382100 Sobic003G382100 Sobic009G006900 Sobic009G006900 Sobic003G382100--Sobic009G006900 Sobic003G274400 Sobic003G274400 Sobic003G382100--Sobic003G274400 Sobic006G272800 Sobic006G272800 Sobic003G382100--Sobic006G272800 Sobic001G468000 Sobic001G468000 Sobic003G382100--Sobic001G468000 Sobic002G196500 Sobic002G196500 Sobic003G382100--Sobic002G196500 Sobic005G032600 Sobic005G032600 Sobic003G382100--Sobic005G032600 Sobic009G087700 Sobic009G087700 Sobic003G382100--Sobic009G087700 Sobic002G374200 Sobic002G374200 Sobic003G382100--Sobic002G374200 Sobic005G062600 Sobic005G062600 Sobic003G382100--Sobic005G062600 Sobic004G207000 Sobic004G207000 Sobic009G006900--Sobic004G207000 Sobic010G149600 Sobic010G149600 Sobic009G006900--Sobic010G149600 Sobic009G006900--Sobic006G272800 Sobic002G430900 Sobic002G430900 Sobic009G006900--Sobic002G430900 Sobic009G006900--Sobic002G196500 Sobic009G006900--Sobic005G062600 Sobic002G302600 Sobic002G302600 Sobic009G006900--Sobic002G302600 Sobic002G017900 Sobic002G017900 Sobic009G006900--Sobic002G017900 Sobic001G540700 Sobic001G540700 Sobic009G006900--Sobic001G540700 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic006G245700 Sobic006G245700 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic007G125700 Sobic007G125700 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic004G129600 Sobic004G129600 Sobic003G274400--Sobic004G129600 Sobic003G274400--Sobic002G430900 Sobic003G274400--Sobic002G017900 Sobic006G280100 Sobic006G280100 Sobic003G274400--Sobic006G280100 Sobic002G284100 Sobic002G284100 Sobic006G272800--Sobic002G284100 Sobic002G027600 Sobic002G027600 Sobic006G272800--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic006G272800--Sobic004G267600 Sobic008G070700 Sobic008G070700 Sobic006G272800--Sobic008G070700 Sobic006G272800--Sobic005G032600 Sobic006G272800--Sobic001G468000 Sobic002G006100 Sobic002G006100 Sobic006G272800--Sobic002G006100 Sobic006G142500 Sobic006G142500 Sobic006G272800--Sobic006G142500 Sobic001G158300 Sobic001G158300 Sobic006G272800--Sobic001G158300 Sobic006G066400 Sobic006G066400 Sobic001G468000--Sobic006G066400 Sobic010G212700 Sobic010G212700 Sobic001G468000--Sobic010G212700 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic001G468000--Sobic002G284100 Sobic001G468000--Sobic001G158300 Sobic010G180200 Sobic010G180200 Sobic001G468000--Sobic010G180200 Sobic001G468000--Sobic002G302600 Sobic001G171100 Sobic001G171100 Sobic001G468000--Sobic001G171100 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic002G196500--Sobic001G468000 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G335500 Sobic002G335500 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic007G201900 Sobic007G201900 Sobic002G196500--Sobic007G201900 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200 Sobic005G032600--Sobic002G027600 Sobic005G032600--Sobic004G267600 Sobic001G079900 Sobic001G079900 Sobic005G032600--Sobic001G079900 Sobic003G019900 Sobic003G019900 Sobic005G032600--Sobic003G019900 Sobic005G032600--Sobic006G272800 Sobic001G493900 Sobic001G493900 Sobic005G032600--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic005G032600--Sobic008G151600 Sobic003G351900 Sobic003G351900 Sobic005G032600--Sobic003G351900 Sobic007G032100 Sobic007G032100 Sobic005G032600--Sobic007G032100 Sobic006G221800 Sobic006G221800 Sobic009G087700--Sobic006G221800 Sobic004G003700 Sobic004G003700 Sobic009G087700--Sobic004G003700 Sobic001G101900 Sobic001G101900 Sobic009G087700--Sobic001G101900 Sobic007G147200 Sobic007G147200 Sobic009G087700--Sobic007G147200 Sobic008G125700 Sobic008G125700 Sobic009G087700--Sobic008G125700 Sobic001G101700 Sobic001G101700 Sobic009G087700--Sobic001G101700 Sobic002G360500 Sobic002G360500 Sobic009G087700--Sobic002G360500 Sobic001G496400 Sobic001G496400 Sobic009G087700--Sobic001G496400 Sobic001G393200 Sobic001G393200 Sobic009G087700--Sobic001G393200 Sobic002G374200--Sobic010G212700 Sobic001G500500 Sobic001G500500 Sobic002G374200--Sobic001G500500 Sobic010G237800 Sobic010G237800 Sobic002G374200--Sobic010G237800 Sobic003G007200 Sobic003G007200 Sobic002G374200--Sobic003G007200 Sobic007G153700 Sobic007G153700 Sobic002G374200--Sobic007G153700 Sobic005G160200 Sobic005G160200 Sobic002G374200--Sobic005G160200 Sobic009G232500 Sobic009G232500 Sobic002G374200--Sobic009G232500 Sobic003G410200 Sobic003G410200 Sobic002G374200--Sobic003G410200 Sobic002G374200--Sobic002G196500 Sobic005G062600--Sobic004G267600 Sobic010G092400 Sobic010G092400 Sobic005G062600--Sobic010G092400 Sobic007G121600 Sobic007G121600 Sobic005G062600--Sobic007G121600 Sobic005G062600--Sobic001G079900 Sobic010G129700 Sobic010G129700 Sobic005G062600--Sobic010G129700 Sobic007G161600 Sobic007G161600 Sobic005G062600--Sobic007G161600 Sobic005G062600--Sobic001G493900 Sobic005G062600--Sobic008G070700 Sobic005G062600--Sobic003G019900
Octagon: transcription factors


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