Gene annotation
Transcriptome id Sobic.005G021700.2,Sobic.005G021700.1
Synonym Sb05g001830, emb1379
Functional annotation EMB1379, putative, expressed
UniProt C5Y3Z2 , A0A1Z5RGZ4
Pfam PF08746 PF07574
Panther DB PTHR20973 PTHR20973:SF0
NCBI CDD KOG4718; Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1)
KEGG Orthology -
Gene Ontology GO:0006281; DNA repair


Orthologs (automatic annotation)
TAIR AT5G21140 : embryo defective 1379
RAP-DB (Rice) LOC_Os12g03360.1 : EMB1379, putative, expressed
MaizeGDB (Corn) Zm00025a053724
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
2 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
3 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
4 Sobic.004G208100 expressed protein -
5 Sobic.003G382100 PHD finger protein, putative, expressed -
6 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
7 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
8 Sobic.010G177100 expressed protein -
9 Sobic.001G440900 LSM domain containing protein, expressed K11088: SNRPD3, small nuclear ribonucleoprotein D3
10 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
11 Sobic.003G259300 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
12 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
13 Sobic.007G153700 transcription regulator, putative, expressed -
14 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
15 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
16 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
17 Sobic.003G188600 expressed protein -
18 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
19 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
20 Sobic.007G195600 expressed protein -


Gene co-expression network
sample Sobic005G021700 Sobic005G021700 Sobic002G335500 Sobic002G335500 Sobic005G021700--Sobic002G335500 Sobic003G212600 Sobic003G212600 Sobic005G021700--Sobic003G212600 Sobic002G351100 Sobic002G351100 Sobic005G021700--Sobic002G351100 Sobic004G208100 Sobic004G208100 Sobic005G021700--Sobic004G208100 Sobic003G382100 Sobic003G382100 Sobic005G021700--Sobic003G382100 Sobic009G006900 Sobic009G006900 Sobic005G021700--Sobic009G006900 Sobic001G468000 Sobic001G468000 Sobic005G021700--Sobic001G468000 Sobic010G177100 Sobic010G177100 Sobic005G021700--Sobic010G177100 Sobic001G440900 Sobic001G440900 Sobic005G021700--Sobic001G440900 Sobic004G078500 Sobic004G078500 Sobic002G335500--Sobic004G078500 Sobic001G081800 Sobic001G081800 Sobic002G335500--Sobic001G081800 Sobic002G196500 Sobic002G196500 Sobic002G335500--Sobic002G196500 Sobic001G005800 Sobic001G005800 Sobic002G335500--Sobic001G005800 Sobic009G002200 Sobic009G002200 Sobic002G335500--Sobic009G002200 Sobic003G259300 Sobic003G259300 Sobic002G335500--Sobic003G259300 Sobic002G006100 Sobic002G006100 Sobic002G335500--Sobic002G006100 Sobic004G145300 Sobic004G145300 Sobic002G335500--Sobic004G145300 Sobic001G465500 Sobic001G465500 Sobic002G335500--Sobic001G465500 Sobic001G054700 Sobic001G054700 Sobic003G212600--Sobic001G054700 Sobic007G076200 Sobic007G076200 Sobic003G212600--Sobic007G076200 Sobic002G204400 Sobic002G204400 Sobic003G212600--Sobic002G204400 Sobic001G140700 Sobic001G140700 Sobic003G212600--Sobic001G140700 Sobic009G087300 Sobic009G087300 Sobic003G212600--Sobic009G087300 Sobic010G105400 Sobic010G105400 Sobic003G212600--Sobic010G105400 Sobic001G231200 Sobic001G231200 Sobic003G212600--Sobic001G231200 Sobic002G021200 Sobic002G021200 Sobic003G212600--Sobic002G021200 Sobic001G296800 Sobic001G296800 Sobic003G212600--Sobic001G296800 Sobic001G300400 Sobic001G300400 Sobic002G351100--Sobic001G300400 Sobic003G297200 Sobic003G297200 Sobic002G351100--Sobic003G297200 Sobic001G521100 Sobic001G521100 Sobic002G351100--Sobic001G521100 Sobic003G244000 Sobic003G244000 Sobic002G351100--Sobic003G244000 Sobic002G315400 Sobic002G315400 Sobic002G351100--Sobic002G315400 Sobic009G194900 Sobic009G194900 Sobic002G351100--Sobic009G194900 Sobic002G351100--Sobic001G440900 Sobic002G246900 Sobic002G246900 Sobic002G351100--Sobic002G246900 Sobic001G238900 Sobic001G238900 Sobic002G351100--Sobic001G238900 Sobic010G021900 Sobic010G021900 Sobic004G208100--Sobic010G021900 Sobic003G444300 Sobic003G444300 Sobic004G208100--Sobic003G444300 Sobic002G303800 Sobic002G303800 Sobic004G208100--Sobic002G303800 Sobic004G208100--Sobic001G238900 Sobic002G133000 Sobic002G133000 Sobic004G208100--Sobic002G133000 Sobic001G169800 Sobic001G169800 Sobic004G208100--Sobic001G169800 Sobic001G122100 Sobic001G122100 Sobic004G208100--Sobic001G122100 Sobic001G235700 Sobic001G235700 Sobic004G208100--Sobic001G235700 Sobic004G208100--Sobic002G246900 Sobic003G382100--Sobic009G006900 Sobic003G274400 Sobic003G274400 Sobic003G382100--Sobic003G274400 Sobic006G272800 Sobic006G272800 Sobic003G382100--Sobic006G272800 Sobic003G382100--Sobic001G468000 Sobic003G382100--Sobic002G196500 Sobic005G032600 Sobic005G032600 Sobic003G382100--Sobic005G032600 Sobic009G087700 Sobic009G087700 Sobic003G382100--Sobic009G087700 Sobic002G374200 Sobic002G374200 Sobic003G382100--Sobic002G374200 Sobic005G062600 Sobic005G062600 Sobic003G382100--Sobic005G062600 Sobic004G207000 Sobic004G207000 Sobic009G006900--Sobic004G207000 Sobic010G149600 Sobic010G149600 Sobic009G006900--Sobic010G149600 Sobic009G006900--Sobic006G272800 Sobic002G430900 Sobic002G430900 Sobic009G006900--Sobic002G430900 Sobic009G006900--Sobic002G196500 Sobic009G006900--Sobic005G062600 Sobic002G302600 Sobic002G302600 Sobic009G006900--Sobic002G302600 Sobic002G017900 Sobic002G017900 Sobic009G006900--Sobic002G017900 Sobic001G540700 Sobic001G540700 Sobic009G006900--Sobic001G540700 Sobic006G066400 Sobic006G066400 Sobic001G468000--Sobic006G066400 Sobic010G212700 Sobic010G212700 Sobic001G468000--Sobic010G212700 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic002G284100 Sobic002G284100 Sobic001G468000--Sobic002G284100 Sobic001G158300 Sobic001G158300 Sobic001G468000--Sobic001G158300 Sobic010G180200 Sobic010G180200 Sobic001G468000--Sobic010G180200 Sobic001G468000--Sobic002G302600 Sobic001G171100 Sobic001G171100 Sobic001G468000--Sobic001G171100 Sobic001G460100 Sobic001G460100 Sobic010G177100--Sobic001G460100 Sobic010G177100--Sobic003G259300 Sobic010G079100 Sobic010G079100 Sobic010G177100--Sobic010G079100 Sobic003G024000 Sobic003G024000 Sobic010G177100--Sobic003G024000 Sobic005G157300 Sobic005G157300 Sobic010G177100--Sobic005G157300 Sobic001G425700 Sobic001G425700 Sobic010G177100--Sobic001G425700 Sobic007G050800 Sobic007G050800 Sobic010G177100--Sobic007G050800 Sobic003G412800 Sobic003G412800 Sobic010G177100--Sobic003G412800 Sobic009G225500 Sobic009G225500 Sobic010G177100--Sobic009G225500 Sobic001G440900--Sobic002G351100 Sobic001G440900--Sobic001G300400 Sobic010G001800 Sobic010G001800 Sobic001G440900--Sobic010G001800 Sobic001G289900 Sobic001G289900 Sobic001G440900--Sobic001G289900 Sobic004G327600 Sobic004G327600 Sobic001G440900--Sobic004G327600 Sobic001G440900--Sobic001G235700 Sobic001G107300 Sobic001G107300 Sobic001G440900--Sobic001G107300 Sobic002G289800 Sobic002G289800 Sobic001G440900--Sobic002G289800 Sobic007G153700 Sobic007G153700 Sobic001G440900--Sobic007G153700
Octagon: transcription factors


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