Gene annotation
Transcriptome id Sobic.010G180200.3
Synonym
Functional annotation transcription factor S-II, central domain containing protein, expressed
UniProt A0A1W0VTR4
Pfam PF07744 PF07500
Panther DB PTHR11477 PTHR11477:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G11430 : SPOC domain / Transcription elongation factor S-II protein
RAP-DB (Rice) LOC_Os02g11780.1 : transcription factor S-II, central domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS7D02G350900 , TraesCS7B02G255700 , TraesCS7A02G372000
Populus -


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cDNA sequences
Sobic.010G180200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G402100 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
2 Sobic.001G053700 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
3 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
4 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
5 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
6 Sobic.001G394900 expressed protein -
7 Sobic.007G023600 ATP binding protein, putative, expressed -
8 Sobic.004G218000 SET domain containing protein, expressed -
9 Sobic.010G212700 tetraspanin family protein, putative, expressed -
10 Sobic.006G261200 Trihelix Family(PubMedID : 24864043)@GL4(Ortholog in rice:Wu et al. (2017) )(PubMedID : 31659902)@transcription factor, putative, expressed -
11 Sobic.006G140300 expressed protein -
12 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
13 Sobic.010G193700 expressed protein -
14 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
15 Sobic.002G122000 - -
16 Sobic.002G360900 GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
17 Sobic.004G354600 expressed protein -
18 Sobic.007G128400 expressed protein -
19 Sobic.004G250600 NHL repeat-containing protein, putative, expressed -
20 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4


Gene co-expression network
sample Sobic010G180200 Sobic010G180200 Sobic003G402100 Sobic003G402100 Sobic010G180200--Sobic003G402100 Sobic001G053700 Sobic001G053700 Sobic010G180200--Sobic001G053700 Sobic001G324800 Sobic001G324800 Sobic010G180200--Sobic001G324800 Sobic006G066400 Sobic006G066400 Sobic010G180200--Sobic006G066400 Sobic004G014100 Sobic004G014100 Sobic010G180200--Sobic004G014100 Sobic001G394900 Sobic001G394900 Sobic010G180200--Sobic001G394900 Sobic007G023600 Sobic007G023600 Sobic010G180200--Sobic007G023600 Sobic004G218000 Sobic004G218000 Sobic010G180200--Sobic004G218000 Sobic010G212700 Sobic010G212700 Sobic010G180200--Sobic010G212700 Sobic003G402100--Sobic001G394900 Sobic001G170500 Sobic001G170500 Sobic003G402100--Sobic001G170500 Sobic003G402100--Sobic007G023600 Sobic004G254400 Sobic004G254400 Sobic003G402100--Sobic004G254400 Sobic003G402100--Sobic001G053700 Sobic003G402100--Sobic010G180200 Sobic009G227000 Sobic009G227000 Sobic003G402100--Sobic009G227000 Sobic004G274500 Sobic004G274500 Sobic003G402100--Sobic004G274500 Sobic008G176300 Sobic008G176300 Sobic003G402100--Sobic008G176300 Sobic001G053700--Sobic003G402100 Sobic002G360900 Sobic002G360900 Sobic001G053700--Sobic002G360900 Sobic002G381750 Sobic002G381750 Sobic001G053700--Sobic002G381750 Sobic001G053700--Sobic010G180200 Sobic001G053700--Sobic001G394900 Sobic001G053700--Sobic004G254400 Sobic001G053700--Sobic001G324800 Sobic001G259300 Sobic001G259300 Sobic001G053700--Sobic001G259300 Sobic003G323000 Sobic003G323000 Sobic001G053700--Sobic003G323000 Sobic003G092600 Sobic003G092600 Sobic001G324800--Sobic003G092600 Sobic001G324800--Sobic001G394900 Sobic002G015800 Sobic002G015800 Sobic001G324800--Sobic002G015800 Sobic001G324800--Sobic002G360900 Sobic004G262100 Sobic004G262100 Sobic001G324800--Sobic004G262100 Sobic006G015800 Sobic006G015800 Sobic001G324800--Sobic006G015800 Sobic010G022600 Sobic010G022600 Sobic001G324800--Sobic010G022600 Sobic001G509100 Sobic001G509100 Sobic001G324800--Sobic001G509100 Sobic010G107300 Sobic010G107300 Sobic001G324800--Sobic010G107300 Sobic001G468000 Sobic001G468000 Sobic006G066400--Sobic001G468000 Sobic003G022900 Sobic003G022900 Sobic006G066400--Sobic003G022900 Sobic006G066400--Sobic010G212700 Sobic006G066400--Sobic010G180200 Sobic001G171100 Sobic001G171100 Sobic006G066400--Sobic001G171100 Sobic002G196500 Sobic002G196500 Sobic006G066400--Sobic002G196500 Sobic002G366000 Sobic002G366000 Sobic006G066400--Sobic002G366000 Sobic002G244600 Sobic002G244600 Sobic006G066400--Sobic002G244600 Sobic006G272800 Sobic006G272800 Sobic006G066400--Sobic006G272800 Sobic002G343000 Sobic002G343000 Sobic004G014100--Sobic002G343000 Sobic006G200901 Sobic006G200901 Sobic004G014100--Sobic006G200901 Sobic005G160200 Sobic005G160200 Sobic004G014100--Sobic005G160200 Sobic006G143300 Sobic006G143300 Sobic004G014100--Sobic006G143300 Sobic003G343200 Sobic003G343200 Sobic004G014100--Sobic003G343200 Sobic002G349000 Sobic002G349000 Sobic004G014100--Sobic002G349000 Sobic002G230400 Sobic002G230400 Sobic004G014100--Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300 Sobic001G394900--Sobic001G324800 Sobic004G294100 Sobic004G294100 Sobic001G394900--Sobic004G294100 Sobic001G394900--Sobic010G022600 Sobic004G099750 Sobic004G099750 Sobic001G394900--Sobic004G099750 Sobic001G394900--Sobic003G402100 Sobic001G394900--Sobic010G107300 Sobic005G226150 Sobic005G226150 Sobic001G394900--Sobic005G226150 Sobic001G175501 Sobic001G175501 Sobic001G394900--Sobic001G175501 Sobic008G088881 Sobic008G088881 Sobic001G394900--Sobic008G088881 Sobic009G253800 Sobic009G253800 Sobic007G023600--Sobic009G253800 Sobic006G261200 Sobic006G261200 Sobic007G023600--Sobic006G261200 Sobic007G023600--Sobic003G402100 Sobic004G190200 Sobic004G190200 Sobic007G023600--Sobic004G190200 Sobic010G118200 Sobic010G118200 Sobic007G023600--Sobic010G118200 Sobic007G023600--Sobic001G170500 Sobic007G091200 Sobic007G091200 Sobic007G023600--Sobic007G091200 Sobic004G250600 Sobic004G250600 Sobic007G023600--Sobic004G250600 Sobic004G294500 Sobic004G294500 Sobic007G023600--Sobic004G294500 Sobic003G217300 Sobic003G217300 Sobic004G218000--Sobic003G217300 Sobic007G056900 Sobic007G056900 Sobic004G218000--Sobic007G056900 Sobic005G164800 Sobic005G164800 Sobic004G218000--Sobic005G164800 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic005G041900 Sobic005G041900 Sobic004G218000--Sobic005G041900 Sobic004G218000--Sobic003G022900 Sobic009G042600 Sobic009G042600 Sobic004G218000--Sobic009G042600 Sobic004G218000--Sobic010G180200 Sobic010G212700--Sobic001G171100 Sobic010G212700--Sobic001G468000 Sobic010G212700--Sobic003G022900 Sobic010G212700--Sobic006G066400 Sobic010G212700--Sobic010G180200 Sobic010G212700--Sobic002G196500 Sobic010G212700--Sobic004G218000 Sobic002G374200 Sobic002G374200 Sobic010G212700--Sobic002G374200 Sobic010G212700--Sobic004G014100
Octagon: transcription factors


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