Gene annotation
Transcriptome id Sobic.001G053700.2,Sobic.001G053700.3
Synonym Sb01g004920, AGO1
Functional annotation PAZ domain containing protein, putative, expressed
UniProt A0A1Z5S4E9 , C5WX38
Pfam PF16487 PF16488 PF08699 PF02170 PF02171 PF16487 PF16488 PF16486 PF08699 PF02170 PF02171
Panther DB PTHR22891 PTHR22891:SF24
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G48410 : Stabilizer of iron transporter SufD / Polynucleotidyl transferase
RAP-DB (Rice) LOC_Os03g58600.1 : PAZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057453 , Zm00025a016559
Brachypodium PNT73966 , PNT73963 , PNT73819 , PNT73965 , PNT73964 , PNT76868 , PNT73818 , PNT73817 , KQK12183 , KQK12181
Barley HORVU2Hr1G031130.23 , HORVU2Hr1G031130.22 , HORVU2Hr1G031130.20 , HORVU2Hr1G031130.27 , HORVU2Hr1G031130.8 , HORVU2Hr1G031130.9 , HORVU2Hr1G031130.1 , HORVU2Hr1G031130.2 , HORVU2Hr1G031130.3 , HORVU2Hr1G031130.4 , HORVU2Hr1G031130.5 , HORVU2Hr1G031130.6 , HORVU2Hr1G031130.28 , HORVU2Hr1G031130.21 , HORVU2Hr1G031130.24 , HORVU2Hr1G031130.12 , HORVU2Hr1G031130.13 , HORVU2Hr1G031130.10 , HORVU2Hr1G031130.11 , HORVU2Hr1G031130.16 , HORVU2Hr1G031130.17 , HORVU2Hr1G031130.14 , HORVU2Hr1G031130.15 , HORVU2Hr1G031130.19
Wheat TraesCS5B02G455700 , TraesCS2D02G176500 , TraesCS2D02G176500 , TraesCS5D02G454200 , TraesCS5D02G454200 , TraesCS2A02G168900 , TraesCS2A02G168900 , TraesCS5B02G451400 , TraesCS5B02G451400 , TraesCS5A02G446000 , TraesCS5A02G446000 , TraesCS3B02G287600 , TraesCS3B02G287600 , TraesCS5B02G452500 , TraesCS5B02G454200 , TraesCS5B02G454200 , TraesCS5D02G192700 , TraesCS5B02G479300 , TraesCS5B02G479300 , TraesCS5D02G192700 , TraesCS5B02G479300 , TraesCS2B02G195200 , TraesCS2B02G195200
Populus -


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cDNA sequences
Sobic.001G053700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G402100 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
2 Sobic.002G360900 GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
3 Sobic.002G381750 - K03094: SKP1, S-phase kinase-associated protein 1
4 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
5 Sobic.001G394900 expressed protein -
6 Sobic.004G254400 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
7 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
8 Sobic.001G259300 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
9 Sobic.003G323000 - -
10 Sobic.008G011400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
11 Sobic.009G156200 starch binding domain containing protein, putative, expressed -
12 Sobic.008G013100 expressed protein -
13 Sobic.004G037300 cycloartenol synthase, putative, expressed -
14 Sobic.010G022600 encodes granule-bound ADP-glucose-gluosyl transferase(PubMedID : 20585750)@-(PubMedID : 9866201)@starch synthase, putative, expressed K13679: granule-bound starch synthase
15 Sobic.007G023600 ATP binding protein, putative, expressed -
16 Sobic.003G242200 Up-reguralion under drought(PubMedID : 24916767)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
17 Sobic.009G227000 expressed protein -
18 Sobic.008G013000 expressed protein -
19 Sobic.010G118200 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
20 Sobic.008G088881 - -


Gene co-expression network
sample Sobic001G053700 Sobic001G053700 Sobic003G402100 Sobic003G402100 Sobic001G053700--Sobic003G402100 Sobic002G360900 Sobic002G360900 Sobic001G053700--Sobic002G360900 Sobic002G381750 Sobic002G381750 Sobic001G053700--Sobic002G381750 Sobic010G180200 Sobic010G180200 Sobic001G053700--Sobic010G180200 Sobic001G394900 Sobic001G394900 Sobic001G053700--Sobic001G394900 Sobic004G254400 Sobic004G254400 Sobic001G053700--Sobic004G254400 Sobic001G324800 Sobic001G324800 Sobic001G053700--Sobic001G324800 Sobic001G259300 Sobic001G259300 Sobic001G053700--Sobic001G259300 Sobic003G323000 Sobic003G323000 Sobic001G053700--Sobic003G323000 Sobic003G402100--Sobic001G394900 Sobic001G170500 Sobic001G170500 Sobic003G402100--Sobic001G170500 Sobic007G023600 Sobic007G023600 Sobic003G402100--Sobic007G023600 Sobic003G402100--Sobic004G254400 Sobic003G402100--Sobic001G053700 Sobic003G402100--Sobic010G180200 Sobic009G227000 Sobic009G227000 Sobic003G402100--Sobic009G227000 Sobic004G274500 Sobic004G274500 Sobic003G402100--Sobic004G274500 Sobic008G176300 Sobic008G176300 Sobic003G402100--Sobic008G176300 Sobic008G088881 Sobic008G088881 Sobic002G360900--Sobic008G088881 Sobic010G107300 Sobic010G107300 Sobic002G360900--Sobic010G107300 Sobic005G083160 Sobic005G083160 Sobic002G360900--Sobic005G083160 Sobic001G233900 Sobic001G233900 Sobic002G360900--Sobic001G233900 Sobic005G226150 Sobic005G226150 Sobic002G360900--Sobic005G226150 Sobic010G022600 Sobic010G022600 Sobic002G360900--Sobic010G022600 Sobic002G360900--Sobic001G324800 Sobic002G360900--Sobic003G323000 Sobic003G303500 Sobic003G303500 Sobic002G360900--Sobic003G303500 Sobic008G011400 Sobic008G011400 Sobic002G381750--Sobic008G011400 Sobic003G027700 Sobic003G027700 Sobic002G381750--Sobic003G027700 Sobic002G381750--Sobic001G259300 Sobic002G381750--Sobic003G323000 Sobic001G530400 Sobic001G530400 Sobic002G381750--Sobic001G530400 Sobic003G342000 Sobic003G342000 Sobic002G381750--Sobic003G342000 Sobic009G061800 Sobic009G061800 Sobic002G381750--Sobic009G061800 Sobic002G291132 Sobic002G291132 Sobic002G381750--Sobic002G291132 Sobic008G013100 Sobic008G013100 Sobic002G381750--Sobic008G013100 Sobic010G180200--Sobic003G402100 Sobic010G180200--Sobic001G053700 Sobic010G180200--Sobic001G324800 Sobic006G066400 Sobic006G066400 Sobic010G180200--Sobic006G066400 Sobic004G014100 Sobic004G014100 Sobic010G180200--Sobic004G014100 Sobic010G180200--Sobic001G394900 Sobic010G180200--Sobic007G023600 Sobic004G218000 Sobic004G218000 Sobic010G180200--Sobic004G218000 Sobic010G212700 Sobic010G212700 Sobic010G180200--Sobic010G212700 Sobic001G394900--Sobic001G324800 Sobic004G294100 Sobic004G294100 Sobic001G394900--Sobic004G294100 Sobic001G394900--Sobic010G022600 Sobic004G099750 Sobic004G099750 Sobic001G394900--Sobic004G099750 Sobic001G394900--Sobic003G402100 Sobic001G394900--Sobic010G107300 Sobic001G394900--Sobic005G226150 Sobic001G175501 Sobic001G175501 Sobic001G394900--Sobic001G175501 Sobic001G394900--Sobic008G088881 Sobic004G254400--Sobic008G013100 Sobic005G187100 Sobic005G187100 Sobic004G254400--Sobic005G187100 Sobic010G031600 Sobic010G031600 Sobic004G254400--Sobic010G031600 Sobic007G082900 Sobic007G082900 Sobic004G254400--Sobic007G082900 Sobic010G219300 Sobic010G219300 Sobic004G254400--Sobic010G219300 Sobic004G254400--Sobic003G323000 Sobic003G105600 Sobic003G105600 Sobic004G254400--Sobic003G105600 Sobic010G034900 Sobic010G034900 Sobic004G254400--Sobic010G034900 Sobic010G136300 Sobic010G136300 Sobic004G254400--Sobic010G136300 Sobic003G092600 Sobic003G092600 Sobic001G324800--Sobic003G092600 Sobic001G324800--Sobic001G394900 Sobic002G015800 Sobic002G015800 Sobic001G324800--Sobic002G015800 Sobic001G324800--Sobic002G360900 Sobic004G262100 Sobic004G262100 Sobic001G324800--Sobic004G262100 Sobic006G015800 Sobic006G015800 Sobic001G324800--Sobic006G015800 Sobic001G324800--Sobic010G022600 Sobic001G509100 Sobic001G509100 Sobic001G324800--Sobic001G509100 Sobic001G324800--Sobic010G107300 Sobic001G259300--Sobic003G323000 Sobic003G350900 Sobic003G350900 Sobic001G259300--Sobic003G350900 Sobic005G188000 Sobic005G188000 Sobic001G259300--Sobic005G188000 Sobic001G259300--Sobic009G061800 Sobic001G259300--Sobic008G013100 Sobic001G259300--Sobic003G105600 Sobic009G022700 Sobic009G022700 Sobic001G259300--Sobic009G022700 Sobic009G186400 Sobic009G186400 Sobic001G259300--Sobic009G186400 Sobic008G064000 Sobic008G064000 Sobic001G259300--Sobic008G064000 Sobic003G323000--Sobic001G259300 Sobic003G323000--Sobic008G013100 Sobic003G323000--Sobic003G105600 Sobic003G323000--Sobic003G350900 Sobic003G323000--Sobic005G188000 Sobic003G323000--Sobic009G022700 Sobic003G323000--Sobic009G186400 Sobic003G323000--Sobic008G064000 Sobic006G059900 Sobic006G059900 Sobic003G323000--Sobic006G059900
Octagon: transcription factors


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