Gene annotation
Transcriptome id Sobic.007G023600.1
Synonym Sb07g002080
Functional annotation ATP binding protein, putative, expressed
UniProt C5YMH9
Pfam PF13177
Panther DB PTHR11669 PTHR11669:SF22
NCBI CDD KOG0989; Replication factor C, subunit RFC4
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24790 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os08g02670.1 : ATP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a030216
Brachypodium KQJ94907 , KQJ94908
Barley HORVU7Hr1G074870.11 , HORVU7Hr1G074870.10 , HORVU7Hr1G074870.7 , HORVU7Hr1G074870.5 , HORVU7Hr1G074870.4 , HORVU7Hr1G074870.3 , HORVU7Hr1G074870.2 , HORVU7Hr1G074870.9 , HORVU7Hr1G074870.8
Wheat TraesCS7D02G310800 , TraesCS7D02G310800 , TraesCS7A02G313900 , TraesCS7B02G214800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G253800 aspartic proteinase, putative, expressed -
2 Sobic.006G261200 Trihelix Family(PubMedID : 24864043)@GL4(Ortholog in rice:Wu et al. (2017) )(PubMedID : 31659902)@transcription factor, putative, expressed -
3 Sobic.003G402100 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
4 Sobic.004G190200 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
5 Sobic.010G118200 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
6 Sobic.001G170500 expressed protein -
7 Sobic.007G091200 wax synthase isoform 1, putative, expressed -
8 Sobic.004G250600 NHL repeat-containing protein, putative, expressed -
9 Sobic.004G294500 expansin precursor, putative, expressed -
10 Sobic.001G518700 DEF8 - Defensin and Defensin-like DEFL family, expressed -
11 Sobic.001G053700 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
12 Sobic.009G033500 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
14 Sobic.009G007500 DNA binding protein, putative, expressed -
15 Sobic.003G304500 expressed protein -
16 Sobic.009G025100 transporter, putative, expressed -
17 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
18 Sobic.002G247300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed K14431: transcription factor TGA
19 Sobic.008G013000 expressed protein -
20 Sobic.001G425900 EDM2, putative, expressed -


Gene co-expression network
sample Sobic007G023600 Sobic007G023600 Sobic009G253800 Sobic009G253800 Sobic007G023600--Sobic009G253800 Sobic006G261200 Sobic006G261200 Sobic007G023600--Sobic006G261200 Sobic003G402100 Sobic003G402100 Sobic007G023600--Sobic003G402100 Sobic004G190200 Sobic004G190200 Sobic007G023600--Sobic004G190200 Sobic010G118200 Sobic010G118200 Sobic007G023600--Sobic010G118200 Sobic001G170500 Sobic001G170500 Sobic007G023600--Sobic001G170500 Sobic007G091200 Sobic007G091200 Sobic007G023600--Sobic007G091200 Sobic004G250600 Sobic004G250600 Sobic007G023600--Sobic004G250600 Sobic004G294500 Sobic004G294500 Sobic007G023600--Sobic004G294500 Sobic009G253800--Sobic004G294500 Sobic009G253800--Sobic004G190200 Sobic009G007500 Sobic009G007500 Sobic009G253800--Sobic009G007500 Sobic009G253800--Sobic007G091200 Sobic001G518700 Sobic001G518700 Sobic009G253800--Sobic001G518700 Sobic002G141450 Sobic002G141450 Sobic009G253800--Sobic002G141450 Sobic009G253800--Sobic001G170500 Sobic008G088450 Sobic008G088450 Sobic009G253800--Sobic008G088450 Sobic009G253800--Sobic007G023600 Sobic006G261200--Sobic007G023600 Sobic006G261200--Sobic001G170500 Sobic009G168300 Sobic009G168300 Sobic006G261200--Sobic009G168300 Sobic006G261200--Sobic003G402100 Sobic006G261200--Sobic010G118200 Sobic006G261200--Sobic004G250600 Sobic009G017000 Sobic009G017000 Sobic006G261200--Sobic009G017000 Sobic006G261200--Sobic009G253800 Sobic001G068200 Sobic001G068200 Sobic006G261200--Sobic001G068200 Sobic001G394900 Sobic001G394900 Sobic003G402100--Sobic001G394900 Sobic003G402100--Sobic001G170500 Sobic003G402100--Sobic007G023600 Sobic004G254400 Sobic004G254400 Sobic003G402100--Sobic004G254400 Sobic001G053700 Sobic001G053700 Sobic003G402100--Sobic001G053700 Sobic010G180200 Sobic010G180200 Sobic003G402100--Sobic010G180200 Sobic009G227000 Sobic009G227000 Sobic003G402100--Sobic009G227000 Sobic004G274500 Sobic004G274500 Sobic003G402100--Sobic004G274500 Sobic008G176300 Sobic008G176300 Sobic003G402100--Sobic008G176300 Sobic006G121700 Sobic006G121700 Sobic004G190200--Sobic006G121700 Sobic001G243666 Sobic001G243666 Sobic004G190200--Sobic001G243666 Sobic004G190200--Sobic009G253800 Sobic004G190200--Sobic004G294500 Sobic010G164100 Sobic010G164100 Sobic004G190200--Sobic010G164100 Sobic009G191801 Sobic009G191801 Sobic004G190200--Sobic009G191801 Sobic004G190200--Sobic002G141450 Sobic007G075301 Sobic007G075301 Sobic004G190200--Sobic007G075301 Sobic004G190200--Sobic001G518700 Sobic010G118200--Sobic007G091200 Sobic006G104800 Sobic006G104800 Sobic010G118200--Sobic006G104800 Sobic004G294100 Sobic004G294100 Sobic010G118200--Sobic004G294100 Sobic001G425900 Sobic001G425900 Sobic010G118200--Sobic001G425900 Sobic008G071900 Sobic008G071900 Sobic010G118200--Sobic008G071900 Sobic001G142600 Sobic001G142600 Sobic010G118200--Sobic001G142600 Sobic010G118200--Sobic009G168300 Sobic010G102900 Sobic010G102900 Sobic010G118200--Sobic010G102900 Sobic010G118200--Sobic001G170500 Sobic009G025100 Sobic009G025100 Sobic001G170500--Sobic009G025100 Sobic001G170500--Sobic009G007500 Sobic001G170500--Sobic008G088450 Sobic001G170500--Sobic010G118200 Sobic001G170500--Sobic009G253800 Sobic001G170500--Sobic009G227000 Sobic001G170500--Sobic004G294500 Sobic003G024700 Sobic003G024700 Sobic001G170500--Sobic003G024700 Sobic001G170500--Sobic001G518700 Sobic009G033500 Sobic009G033500 Sobic007G091200--Sobic009G033500 Sobic007G091200--Sobic001G518700 Sobic007G091200--Sobic009G007500 Sobic007G091200--Sobic004G294500 Sobic003G189466 Sobic003G189466 Sobic007G091200--Sobic003G189466 Sobic008G081700 Sobic008G081700 Sobic007G091200--Sobic008G081700 Sobic007G091200--Sobic008G088450 Sobic007G091200--Sobic010G118200 Sobic007G091200--Sobic009G253800 Sobic004G250600--Sobic007G023600 Sobic004G250600--Sobic006G261200 Sobic003G217500 Sobic003G217500 Sobic004G250600--Sobic003G217500 Sobic004G250600--Sobic001G170500 Sobic003G304500 Sobic003G304500 Sobic004G250600--Sobic003G304500 Sobic006G186300 Sobic006G186300 Sobic004G250600--Sobic006G186300 Sobic008G179800 Sobic008G179800 Sobic004G250600--Sobic008G179800 Sobic010G207400 Sobic010G207400 Sobic004G250600--Sobic010G207400 Sobic004G250600--Sobic009G025100 Sobic004G294500--Sobic009G007500 Sobic004G294500--Sobic001G518700 Sobic004G294500--Sobic008G088450 Sobic008G088881 Sobic008G088881 Sobic004G294500--Sobic008G088881 Sobic004G294500--Sobic009G253800 Sobic006G062700 Sobic006G062700 Sobic004G294500--Sobic006G062700 Sobic001G112250 Sobic001G112250 Sobic004G294500--Sobic001G112250 Sobic004G294500--Sobic003G024700 Sobic008G103066 Sobic008G103066 Sobic004G294500--Sobic008G103066
Octagon: transcription factors


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